RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 LHFPL4Q7Z7J7 247 aa8.61□□□□□ -1.03
COL3A1-202ENST00000317840 OR4B1Q8NGF8 309 aa8.61□□□□□ -1.03
COL3A1-202ENST00000317840 OR1L8Q8NGR8 309 aa8.61□□□□□ -1.03
COL3A1-202ENST00000317840 RNF2Q99496 336 aa8.61□□□□□ -1.03
COL3A1-202ENST00000317840 SFXN3Q9BWM7 321 aa8.61□□□□□ -1.03
COL3A1-202ENST00000317840 FOXA2Q9Y261 457 aaPredicted RBP8.61□□□□□ -1.03
COL3A1-202ENST00000317840 IGHV3-72A0A0B4J1Y9 119 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 ZNF474Q6S9Z5 364 aaPredicted RBP8.6□□□□□ -1.03
COL3A1-202ENST00000317840 OR1B1Q8NGR6 318 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 TRAV9-1A0A075B6T8 112 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 TRBV9A0A0B4J1U6 114 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 M0R2Z0 102 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 F2RL2O00254 374 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 UPK2O00526 184 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 AMY1AP04745 511 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 TMEM249Q2WGJ8 235 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 C10orf55Q5SWW7 151 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 KLHDC1Q8N7A1 406 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 GNB1LQ9BYB4 327 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 SAP30LQ9HAJ7 183 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 TMEM14BQ9NUH8 114 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 ZNF835Q9Y2P0 537 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 V9GYV3 84 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 CREBBPQ92793 2442 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 DPRXA6NFQ7 191 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 MMP23AO75900 390 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 CCL3L1P16619 93 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 GPR6P46095 362 aaPredicted RBP8.6□□□□□ -1.03
COL3A1-202ENST00000317840 PRCDQ00LT1 54 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 HCP5Q6MZN7 132 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 DCAF16Q9NXF7 216 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 FBXL7Q9UJT9 491 aa8.6□□□□□ -1.03
COL3A1-202ENST00000317840 GGTLC3B5MD39 225 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 GPX1P07203 203 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TMPRSS3P57727 454 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 MMDQ15546 238 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 MSMPQ1L6U9 139 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 COL5A1-AS1Q5SY13 56 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 C1orf229Q6ZS94 237 aaPredicted RBP8.59□□□□□ -1.03
COL3A1-202ENST00000317840 C11orf42Q8N5U0 333 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 SSBP4Q9BWG4 385 aaPredicted RBP8.59□□□□□ -1.03
COL3A1-202ENST00000317840 MRPL20Q9BYC9 149 aaKnown RBP8.59□□□□□ -1.03
COL3A1-202ENST00000317840 PLSCR4Q9NRQ2 329 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 SLC25A10Q9UBX3 287 aaPredicted RBP8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TEX50A0A1B0GTY4 177 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 CX3CL1P78423 397 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 C17orf58Q2M2W7 97 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 COX19Q49B96 90 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TPTE2P1Q5T6R2 138 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TMEM208Q9BTX3 173 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 GAL3ST2Q9H3Q3 398 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 SLC25A15Q9Y619 301 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 CSPG4Q6UVK1 2322 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 KIR2DL5BA0A0G2JN68 375 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 KIR2DL5BA0A0G2JPC4 375 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 IGHG3P01860 377 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TNFRSF1AP19438 455 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 PLGLAQ15195 96 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 PDPNQ86YL7 162 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 KIR2DL5AQ8N109 375 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 FAM57AQ8TBR7 257 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 TPPP3Q9BW30 176 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 OSTCQ9NRP0 149 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 PPIAL4AQ9Y536 164 aa8.59□□□□□ -1.03
COL3A1-202ENST00000317840 BOD1L1Q8NFC6 3051 aa8.59□□□□□ -1.04
COL3A1-202ENST00000317840 SRRM4A7MD48 611 aaKnown RBP8.58□□□□□ -1.04
COL3A1-202ENST00000317840 SLC25A17O43808 307 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 MOSP00540 346 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 RAB4AP20338 218 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 PRR20EP86478 221 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 PRR20CP86479 221 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 PRR20DP86480 221 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 PRR20BP86481 221 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 PRR20AP86496 221 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 LCN12Q6JVE5 192 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 Q6ZS92 163 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 C1orf174Q8IYL3 243 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 KCNS1Q96KK3 526 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 RCHY1Q96PM5 261 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 DLL1O00548 723 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 TCF21O43680 179 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 ZNF324O75467 553 aaPredicted RBP8.58□□□□□ -1.04
COL3A1-202ENST00000317840 HINT1P49773 126 aaPredicted RBP8.58□□□□□ -1.04
COL3A1-202ENST00000317840 ZNF137PP52743 207 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 GNG5P63218 68 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 CD69Q07108 199 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 TBR1Q16650 682 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 TIMM23BQ5SRD1 257 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 DMRTA1Q5VZB9 504 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.58□□□□□ -1.04
COL3A1-202ENST00000317840 LYNX1G3V0Z9 82 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 SIAH2O43255 324 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 CT45A6P0DMU7 189 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 CT45A5P0DMU8 189 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 CT45A7P0DMV0 189 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 LYNX1P0DP58 116 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 CD40P25942 277 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 FOXA3P55318 350 aaPredicted RBP8.58□□□□□ -1.04
COL3A1-202ENST00000317840 SELENOTP62341 195 aa8.58□□□□□ -1.04
COL3A1-202ENST00000317840 BSPH1Q075Z2 132 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms