RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C9JQL5 133 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 HRKO00198 91 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 RNF182Q8N6D2 247 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 C11orf52Q96A22 123 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 MRPL32Q9BYC8 188 aaKnown RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 DLL1O00548 723 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 LIFP15018 202 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 DUX4L9Q6RFH8 374 aaPredicted RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 COLCA1Q6ZS62 124 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 ALKBH3Q96Q83 286 aaPredicted RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 SPANXA1Q9NS26 97 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 A0A087X0K7 114 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 C17orf51A8MQB3 221 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 GZMHP20718 246 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 MALP21145 153 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 DCAF12Q5T6F0 453 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 STPG1Q5TH74 334 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 HAPLN4Q86UW8 402 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 TMEM178AQ8NBL3 297 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 SPTSSBQ8NFR3 76 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 HARBI1Q96MB7 349 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 RNF115Q9Y4L5 304 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 TRAV9-2A0A087WT02 112 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 TMEM8BA6NDV4 472 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 RS1O15537 224 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 TSPOP30536 169 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 MIC13Q5XKP0 118 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 SP5Q6BEB4 398 aaPredicted RBP5.4□□□□□ -1.55
VPS35-201ENST00000299138 DLX4Q92988 240 aaPredicted RBP5.4□□□□□ -1.55
VPS35-201ENST00000299138 C9JAW5 83 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 PROB1E7EW31 1015 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 M0R381 172 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 CDIPTO14735 213 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 CXCL13O43927 109 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 CRPP02741 224 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 GPX1P07203 203 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 ATP5L2Q7Z4Y8 100 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 PLPPR1Q8TBJ4 325 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 UBE2E2Q96LR5 201 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 FOXQ1Q9C009 403 aa5.4□□□□□ -1.55
VPS35-201ENST00000299138 AZU1P20160 251 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 COQ2Q96H96 371 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 IL36BQ9NZH7 164 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 TNFRSF18Q9Y5U5 241 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 A0A1W2PR77 199 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 H0Y8X5 98 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 TNFSF15O95150 251 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 HSD52Q0P140 79 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 CENPWQ5EE01 88 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 TEX43Q6ZNM6 134 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 RASL10BQ96S79 203 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 ZNF703Q9H7S9 590 aaPredicted RBP5.39□□□□□ -1.55
VPS35-201ENST00000299138 NPVFQ9HCQ7 196 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 PKIGQ9Y2B9 76 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 TRAV12-1A0A0B4J245 112 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 IGHV5-51A0A0C4DH38 117 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 EPOPA6NHQ4 379 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 SHISA8B8ZZ34 492 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 RAMP1O60894 148 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 REG1BP48304 166 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 MESP2Q0VG99 397 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 VWC2Q2TAL6 325 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 PDE4DIPQ5VU43 2346 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 TRAV30A0A087WSZ9 112 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 ZNF32P17041 273 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 RAX2Q96IS3 184 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 V9GYY9 64 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 SPAG17Q6Q759 2223 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 PEX7O00628 323 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 CD5LO43866 347 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 CXCL1P09341 107 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 CXCL12P48061 93 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 KRTAP27-1Q3LI81 207 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 NABP1Q96AH0 204 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 ZNF385AQ96PM9 386 aaKnown RBP5.39□□□□□ -1.55
VPS35-201ENST00000299138 DUX5Q96PT3 197 aa5.39□□□□□ -1.55
VPS35-201ENST00000299138 PRRC2BQ5JSZ5 2229 aaKnown RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 A0A1W2PPE3 182 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 INS-IGF2F8WCM5 200 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 INSP01308 110 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 COL9A1P20849 921 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 PLNP26678 52 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 BCL6BQ8N143 479 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 TRAV17A0A0B4J275 112 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 HOXD3P31249 432 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 ASIPP42127 132 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 LINC00305Q7Z4B0 112 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 DUSP15Q9H1R2 295 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 PRNDQ9UKY0 176 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 KIF26AQ9ULI4 1882 aaPredicted RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 FAM231BA6NCW3 169 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 DPM2O94777 84 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 FOXL2P58012 376 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 LINC00158P58513 81 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 SRSF2Q01130 221 aaKnown RBP5.38□□□□□ -1.55
VPS35-201ENST00000299138 GATAD1Q8WUU5 269 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 CLEC1BQ9P126 229 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 A0A1W2PPI3 338 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 F2RL2O00254 374 aa5.38□□□□□ -1.55
VPS35-201ENST00000299138 GFERP55789 205 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms