RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NPIPB3Q92617 1050 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 TMEM167BQ9NRX6 74 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 PSMB11A5LHX3 300 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 GGTLC3B5MD39 225 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 SLC17A3O00476 420 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 SSTP61278 116 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 RUSC1-AS1Q66K80 236 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 OR10G8Q8NGN5 311 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 OR1P1Q8NH06 330 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 C14orf144Q96I85 54 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 AREGP15514 252 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 LGALS4P56470 323 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 PACRGQ96M98 296 aaPredicted RBP16.15■□□□□ 0.18
VPS53-201ENST00000291074 SLC25A33Q9BSK2 321 aa16.15■□□□□ 0.18
VPS53-201ENST00000291074 COX7A1P24310 79 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 MC5RP33032 325 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 LCN2P80188 198 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 OR5I1Q13606 314 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 HCP5Q6MZN7 132 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 EAF1Q96JC9 268 aaPredicted RBP16.14■□□□□ 0.17
VPS53-201ENST00000291074 ZNF124Q15973 351 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 PQLC2Q6ZP29 291 aa16.14■□□□□ 0.17
VPS53-201ENST00000291074 IGKV1D-37A0A075B6S9 117 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 IGLV1-47P01700 117 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 C8orf88P0DMB2 117 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 RPL15P61313 204 aaKnown RBP16.13■□□□□ 0.17
VPS53-201ENST00000291074 FOXL1Q12952 345 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 SLC25A2Q9BXI2 301 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 TAS2R45P59539 299 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 CENPWQ5EE01 88 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 RNASEH2CQ8TDP1 164 aaKnown RBP16.13■□□□□ 0.17
VPS53-201ENST00000291074 FAM167A-AS1Q96KT0 104 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 ABCA1O95477 2261 aa16.13■□□□□ 0.17
VPS53-201ENST00000291074 C9JCJ5 164 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 SUMO1P63165 101 aaKnown RBP16.12■□□□□ 0.17
VPS53-201ENST00000291074 ZNF672Q499Z4 452 aaPredicted RBP16.12■□□□□ 0.17
VPS53-201ENST00000291074 PNKDQ8N490 385 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 IGLC7A0M8Q6 106 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 TNXAQ16473 311 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 IMMP2LQ96T52 175 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 AMBPP02760 352 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 SNRPCP09234 159 aaKnown RBP16.12■□□□□ 0.17
VPS53-201ENST00000291074 PYYP10082 97 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 SUB1P53999 127 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS53-201ENST00000291074 MFAP2P55001 183 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 ADORA2A-AS1P86434 159 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 FBXL19-AS1Q494R0 122 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 OR5AU1Q8NGC0 362 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 C19orf24Q9BVV8 132 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 DNAJC4Q9NNZ3 241 aa16.12■□□□□ 0.17
VPS53-201ENST00000291074 HELTA6NFD8 242 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 COX7A2P2O60397 106 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 LGALS7P47929 136 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 UBE2L3P68036 154 aaKnown RBP16.11■□□□□ 0.17
VPS53-201ENST00000291074 PATE2Q6UY27 113 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 MISP3Q96FF7 219 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 TRAPPC1Q9Y5R8 145 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 ARL2-SNX15V9GYD0 113 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 IGHV3-21A0A0B4J1V1 117 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 PPIAL4CA0A0B4J2A2 164 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 IGHV1-3A0A0C4DH29 117 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 MOSP00540 346 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 PPIAL4GP0DN37 164 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 GNG4P50150 75 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 CLEC7AQ9BXN2 247 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 ZNF355PQ9NSJ1 428 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 INSIG2Q9Y5U4 225 aa16.11■□□□□ 0.17
VPS53-201ENST00000291074 TCRBV4S1A1TA0A5B7 111 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 BUB1B-PAK6H3BSN5 160 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 COA6Q5JTJ3 125 aaKnown RBP16.1■□□□□ 0.17
VPS53-201ENST00000291074 PRDM13Q9H4Q3 707 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 PRRX1P54821 245 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 LHFPL4Q7Z7J7 247 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 MRPL32Q9BYC8 188 aaKnown RBP16.1■□□□□ 0.17
VPS53-201ENST00000291074 PRO1933Q9H354 126 aa16.1■□□□□ 0.17
VPS53-201ENST00000291074 CHD8Q9HCK8 2581 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 A0A1B0GUS0 222 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 ERVFC1-1P60608 527 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 C22orf46C9J442 243 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 RPL27AP46776 148 aaKnown RBP16.09■□□□□ 0.17
VPS53-201ENST00000291074 C10orf113Q5VZT2 155 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 TEX45Q8NA69 505 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 TNFRSF14Q92956 283 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 IL36BQ9NZH7 164 aa16.09■□□□□ 0.17
VPS53-201ENST00000291074 SPTBN1Q01082 2364 aaKnown RBP16.08■□□□□ 0.17
VPS53-201ENST00000291074 CRYGBP07316 175 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 THAP8Q8NA92 274 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 ST6GALNAC3Q8NDV1 305 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 IGFBPL1Q8WX77 278 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 ONECUT1Q9UBC0 465 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 SIGLEC9Q9Y336 463 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 NCOR2Q9Y618 2525 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 FRMD6-AS1P0C7T7 363 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 CNN1P51911 297 aaKnown RBP16.08■□□□□ 0.16
VPS53-201ENST00000291074 KLRB1Q12918 225 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 MMD2Q8IY49 270 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 RNASE7Q9H1E1 156 aaKnown RBP16.08■□□□□ 0.16
VPS53-201ENST00000291074 CHODLQ9H9P2 273 aa16.08■□□□□ 0.16
VPS53-201ENST00000291074 A0A1W2PRE2 83 aa16.07■□□□□ 0.16
VPS53-201ENST00000291074 PDLIM4P50479 330 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms