RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 COX7A2P2O60397 106 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PRR20EP86478 221 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PRR20CP86479 221 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PRR20DP86480 221 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PRR20BP86481 221 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PRR20AP86496 221 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 PLGLAQ15195 96 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 ACTL10Q5JWF8 245 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 BAGE3Q86Y29 109 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 BAGE2Q86Y30 109 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 EAF1Q96JC9 268 aaPredicted RBP13.45□□□□□ -0.26
VPS54-201ENST00000272322 PYGO2Q9BRQ0 406 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 RAB9BQ9NP90 201 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 GPX4P36969 197 aaPredicted RBP13.45□□□□□ -0.26
VPS54-201ENST00000272322 MMD2Q8IY49 270 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 OR1L6Q8NGR2 347 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 ZNF355PQ9NSJ1 428 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 ZNF664Q8N3J9 261 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 FAM168AQ92567 244 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 RAB1CQ92928 201 aa13.45□□□□□ -0.26
VPS54-201ENST00000272322 TSTD3H0UI37 97 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 CD69Q07108 199 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 NAT8BQ9UHF3 227 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 HILPDAQ9Y5L2 63 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 ZFHX3Q15911 3703 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 A0A1B0GV90 55 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 SRP14P37108 136 aaKnown RBP13.44□□□□□ -0.26
VPS54-201ENST00000272322 TECRQ9NZ01 308 aaKnown RBP13.44□□□□□ -0.26
VPS54-201ENST00000272322 CSPG4Q6UVK1 2322 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 LOXP28300 417 aaPredicted RBP13.44□□□□□ -0.26
VPS54-201ENST00000272322 TMPRSS3P57727 454 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 ST6GALNAC3Q8NDV1 305 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 OR4C13Q8NGP0 309 aa13.44□□□□□ -0.26
VPS54-201ENST00000272322 MRPL18Q9H0U6 180 aaKnown RBP13.44□□□□□ -0.26
VPS54-201ENST00000272322 PAX5Q02548 391 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 TIGITQ495A1 244 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 TMEM18Q96B42 140 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 SLC25A33Q9BSK2 321 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 DDTP30046 118 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 TDGF1P3P51864 188 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 CDSNQ15517 529 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 C14orf144Q96I85 54 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 FBXL15Q9H469 300 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 IGHV1-69-2A0A0G2JMI3 117 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 A0A1W2PPI3 338 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 FAM90A9PA6NNJ1 464 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 MS4A10Q96PG2 267 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 ONECUT1Q9UBC0 465 aa13.43□□□□□ -0.26
VPS54-201ENST00000272322 TDRG1Q3Y452 100 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 AARDQ4LEZ3 155 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 TEX36Q5VZQ5 186 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.42□□□□□ -0.26
VPS54-201ENST00000272322 SAMD10Q9BYL1 202 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 VPS13CQ709C8 3753 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 RNF224P0DH78 156 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 ARF6P62330 175 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 TBR1Q16650 682 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 DNAJC4Q9NNZ3 241 aa13.42□□□□□ -0.26
VPS54-201ENST00000272322 CGB1A6NKQ9 187 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 VSTM5A8MXK1 200 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 CRISP2P16562 243 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 CAMPP49913 170 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 OR5B3Q8NH48 314 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 NDUFA4L2Q9NRX3 87 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 SSUH2Q9Y2M2 353 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 CREBBPQ92793 2442 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 C8orf88P0DMB2 117 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 RPL15P61313 204 aaKnown RBP13.41□□□□□ -0.26
VPS54-201ENST00000272322 KLF17Q5JT82 389 aaPredicted RBP13.41□□□□□ -0.26
VPS54-201ENST00000272322 LINC00305Q7Z4B0 112 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 TIMM8BQ9Y5J9 83 aaPredicted RBP13.41□□□□□ -0.26
VPS54-201ENST00000272322 INSIG2Q9Y5U4 225 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 SHISA9B4DS77 424 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 SERF1AO75920 110 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 JOSD1Q15040 202 aaPredicted RBP13.41□□□□□ -0.26
VPS54-201ENST00000272322 C10orf113Q5VZT2 155 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 ZNF833PQ6ZTB9 187 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 NUP37Q8NFH4 326 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 FAM208BQ5VWN6 2430 aa13.41□□□□□ -0.26
VPS54-201ENST00000272322 TGOLN2O43493 480 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 PMCHP20382 165 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 OSR1Q8TAX0 266 aaPredicted RBP13.4□□□□□ -0.26
VPS54-201ENST00000272322 CORO2AQ92828 525 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 CRYBG3Q68DQ2 2970 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 CUBNO60494 3623 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 PIEZO1Q92508 2521 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 IGHV3OR16-8A0A075B7F1 116 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 IGHV1-8P0DP01 117 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 NTF3P20783 257 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 OR5AN1Q8NGI8 311 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 CBLN4Q9NTU7 201 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 BET1LQ9NYM9 111 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 WASHC3Q9Y3C0 194 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 USP9YO00507 2555 aaPredicted RBP13.4□□□□□ -0.26
VPS54-201ENST00000272322 RPEL1Q2QD12 228 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 PNKDQ8N490 385 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 CMTM2Q8TAZ6 248 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 ATG101Q9BSB4 218 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 PAXXQ9BUH6 204 aa13.4□□□□□ -0.26
VPS54-201ENST00000272322 POLQO75417 2590 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms