RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TIMM23O14925 209 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 FOXH1O75593 365 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 PRB1P04280 392 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 SRP14P37108 136 aaKnown RBP12.28□□□□□ -0.44
SF3B4-201ENST00000271628 RPL27AP46776 148 aaKnown RBP12.28□□□□□ -0.44
SF3B4-201ENST00000271628 LGALS4P56470 323 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 LCN2P80188 198 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 GAMTQ14353 236 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 TNXAQ16473 311 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 FAM209BQ5JX69 171 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 C10orf55Q5SWW7 151 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 LDLRAD2Q5SZI1 272 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 MIC13Q5XKP0 118 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 TMEM183AQ8IXX5 376 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 GATAD1Q8WUU5 269 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 HILPDAQ9Y5L2 63 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 GATCO43716 136 aaKnown RBP12.27□□□□□ -0.45
SF3B4-201ENST00000271628 CD99P14209 185 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 FABP4P15090 132 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 CNTFRP26992 372 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 COMPP49747 757 aaPredicted RBP12.27□□□□□ -0.45
SF3B4-201ENST00000271628 KLRD1Q13241 179 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 PDZD11Q5EBL8 140 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 SIRPDQ9H106 197 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 ARHGAP32A7KAX9 2087 aa12.27□□□□□ -0.45
SF3B4-201ENST00000271628 COL12A1Q99715 3063 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 NDUFS8O00217 210 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 COA6Q5JTJ3 125 aaKnown RBP12.26□□□□□ -0.45
SF3B4-201ENST00000271628 ZNF843Q8N446 348 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 CFHR4Q92496 578 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 BTF3L4Q96K17 158 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 SLC35E1Q96K37 410 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PACRGQ96M98 296 aaPredicted RBP12.26□□□□□ -0.45
SF3B4-201ENST00000271628 F6UZH7 168 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 GGCTO75223 188 aaKnown RBP12.26□□□□□ -0.45
SF3B4-201ENST00000271628 TOX4O94842 621 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 MOSP00540 346 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PRR20EP86478 221 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PRR20CP86479 221 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PRR20DP86480 221 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PRR20BP86481 221 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PRR20AP86496 221 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PLGLAQ15195 96 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 KCNIP4Q6PIL6 250 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 LHFPL4Q7Z7J7 247 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 STPG3Q8N7X2 389 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 ZNF114Q8NC26 417 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 NECAP1Q8NC96 275 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 OR2T10Q8NGZ9 312 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 SSMEM1Q8WWF3 244 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 ACY3Q96HD9 319 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 HIST1H2BLQ99880 126 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 PIMREGQ9BSJ6 248 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 ZMAT5Q9UDW3 170 aaKnown RBP12.26□□□□□ -0.45
SF3B4-201ENST00000271628 DOPEY1Q5JWR5 2465 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 FLNCQ14315 2725 aa12.26□□□□□ -0.45
SF3B4-201ENST00000271628 TYMSP04818 313 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 HOXB4P17483 251 aaPredicted RBP12.25□□□□□ -0.45
SF3B4-201ENST00000271628 ETFRF1Q6IPR1 90 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 FAM168AQ92567 244 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 FBXL15Q9H469 300 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 TBL2Q9Y4P3 447 aaKnown RBP12.25□□□□□ -0.45
SF3B4-201ENST00000271628 IGLC7A0M8Q6 106 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 NPPCP23582 126 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 UBE2E1P51965 193 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 RHOBP62745 196 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 MMDQ15546 238 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 GCSAMLQ5JQS6 135 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 NPBQ8NG41 125 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 IMMP2LQ96T52 175 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 SRSF8Q9BRL6 282 aaKnown RBP12.25□□□□□ -0.45
SF3B4-201ENST00000271628 C19orf24Q9BVV8 132 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 PRDM13Q9H4Q3 707 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 SLC45A2Q9UMX9 530 aa12.25□□□□□ -0.45
SF3B4-201ENST00000271628 POLR3KQ9Y2Y1 108 aaPredicted RBP12.25□□□□□ -0.45
SF3B4-201ENST00000271628 CORTO00230 105 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 NBR2O15453 112 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 STAG3L2P0CL84 134 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 STAG3L3P0CL85 134 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 RNF224P0DH78 156 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 SSX2Q16385 188 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 LINC01551Q86U37 167 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 OR1P1Q8NH06 330 aa12.24□□□□□ -0.45
SF3B4-201ENST00000271628 ASH1LQ9NR48 2969 aaKnown RBP12.24□□□□□ -0.45
SF3B4-201ENST00000271628 A0A1W2PPQ1 181 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 NDUFA3O95167 84 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 CXorf1O96002 111 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 MT-CO2P00403 227 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 GNB1P62873 340 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 MLANAQ16655 118 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 PVRIGQ6DKI7 326 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 OR5R1Q8NH85 324 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 IGKV1OR2-108A0A075B7D4 117 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 A0A1W2PRD5 423 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 A0A1W2PRF3 423 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 A0A1W2PRM7 423 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 DEFA4P12838 97 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 CST9LP1Q5W188 147 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 CDPF1Q6NVV7 123 aa12.23□□□□□ -0.45
SF3B4-201ENST00000271628 CLEC2AQ6UVW9 174 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms