RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 A0A0J9YWU9 116 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 CTDSP2O14595 271 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 RAB3DO95716 219 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 TMEM50AO95807 157 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 IFNA17P01571 189 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 UCP1P25874 307 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 ETV6P41212 452 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 NPBWR1P48145 328 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 ALDH3B2P48448 385 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 AKR1C2P52895 323 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 SUB1P53999 127 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS41-201ENST00000265745 CMC4P56277 68 aaPredicted RBP7.18□□□□□ -1.26
VPS41-201ENST00000265745 TAS2R19P59542 299 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 SSBP1Q04837 148 aaKnown RBP7.18□□□□□ -1.26
VPS41-201ENST00000265745 TNFRSF9Q07011 255 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 TRIM16LQ309B1 348 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 DEFB135Q30KP9 77 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 STEAP1BQ6NZ63 245 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 TOMM20LQ6UXN7 152 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 Q6ZRM9 215 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 APRG1Q8IVJ8 170 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 STPG3Q8N7X2 389 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 OR13C8Q8NGS7 320 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 RNF183Q96D59 192 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 GALNT14Q96FL9 552 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 MAP6D1Q9H9H5 199 aa7.18□□□□□ -1.26
VPS41-201ENST00000265745 IGHV3OR16-13A0A075B7E8 117 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 IGHV3-74A0A0B4J1X5 117 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 GABARAPH6UMI1 98 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 B3GALNT1O75752 331 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 CDS2O95674 445 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 CD5P06127 495 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 RNASE2P10153 161 aaKnown RBP7.17□□□□□ -1.26
VPS41-201ENST00000265745 RPL35AP18077 110 aaKnown RBP7.17□□□□□ -1.26
VPS41-201ENST00000265745 RPL5P46777 297 aaKnown RBP7.17□□□□□ -1.26
VPS41-201ENST00000265745 TFPI2P48307 235 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 PPP5CP53041 499 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 EWSR1Q01844 656 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS41-201ENST00000265745 SPCS2Q15005 226 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 MLANAQ16655 118 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 SCGB2B2Q4G0G5 96 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 AARDQ4LEZ3 155 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 ZNF600Q6ZNG1 722 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 GPR141Q7Z602 305 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 LYG2Q86SG7 212 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 SLC35G3Q8N808 338 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 CCDC71LQ8N9Z2 235 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 MARCH1Q8TCQ1 289 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 GLYATL2Q8WU03 294 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 RRNAD1Q96FB5 475 aaKnown RBP7.17□□□□□ -1.26
VPS41-201ENST00000265745 GINS3Q9BRX5 216 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 RTBDNQ9BSG5 229 aaPredicted RBP7.17□□□□□ -1.26
VPS41-201ENST00000265745 VSIRQ9H7M9 311 aa7.17□□□□□ -1.26
VPS41-201ENST00000265745 PUS1Q9Y606 427 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS41-201ENST00000265745 EPPK1P58107 5090 aaKnown RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 IGKV3-7A0A075B6H7 116 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 A0A0G2JRQ6 117 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 A0A1B0GU03 582 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 CORTO00230 105 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 RGS5O15539 181 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 DFFBO76075 338 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 APOHP02749 345 aaPredicted RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 OR5AC1P0C628 307 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 PAFAH1B2P68402 229 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 MRPS10P82664 201 aaKnown RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 MEF2DQ14814 521 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 ZNF124Q15973 351 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 BSXQ3C1V8 233 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 TCF24Q7RTU0 167 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 FAM219AQ8IW50 185 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 GBGT1Q8N5D6 347 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 OR4X1Q8NH49 305 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 OR52E5Q8NH55 327 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 SMIM4Q8WVI0 70 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 ST8SIA2Q92186 375 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 LYSTQ99698 3801 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 PDCD10Q9BUL8 212 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 MRPS26Q9BYN8 205 aaKnown RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 C6orf62Q9GZU0 229 aaPredicted RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 TMEM222Q9H0R3 208 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 CSTL1Q9H114 145 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 FNDC4Q9H6D8 234 aaPredicted RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 MRPL36Q9P0J6 103 aaKnown RBP7.16□□□□□ -1.26
VPS41-201ENST00000265745 PLA2G2DQ9UNK4 145 aa7.16□□□□□ -1.26
VPS41-201ENST00000265745 IGHV3-66A0A0C4DH42 116 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 TEX13DA0A0J9YY54 714 aaPredicted RBP7.15□□□□□ -1.26
VPS41-201ENST00000265745 CXorf65A6NEN9 183 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 MPTX1A8MV57 137 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 CLN5O75503 358 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 IGKV1-17P01599 117 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 HOXA1P49639 335 aaPredicted RBP7.15□□□□□ -1.26
VPS41-201ENST00000265745 SPCS3P61009 180 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 SURF2Q15527 256 aaPredicted RBP7.15□□□□□ -1.26
VPS41-201ENST00000265745 FAAP20Q6NZ36 180 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 SELENOHQ8IZQ5 122 aaKnown RBP7.15□□□□□ -1.26
VPS41-201ENST00000265745 LHFPL5Q8TAF8 219 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 MS4A6AQ9H2W1 248 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 NAA60Q9H7X0 242 aa7.15□□□□□ -1.26
VPS41-201ENST00000265745 ENY2Q9NPA8 101 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms