RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 LOC400499M0QZD8 3231 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 KMT2EQ8IZD2 1858 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 USF3Q68DE3 2245 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 A0A1W2PN81 502 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 ITGB1BP1O14713 200 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 C12orf54Q6X4T0 127 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 OR51G1Q8NGK1 321 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 TIMD4Q96H15 378 aa13.43□□□□□ -0.26
CTCF-201ENST00000264010 PCNX1Q96RV3 2341 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 C15orf61A6NNL5 157 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 UBE2G1P62253 170 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 STPG3Q8N7X2 389 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 OR8A1Q8NGG7 326 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 OR8B2Q96RD0 313 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 TXNDC17Q9BRA2 123 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 SCNM1Q9BWG6 230 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 SDF2L1Q9HCN8 221 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 RPUSD1Q9UJJ7 312 aaKnown RBP13.42□□□□□ -0.26
CTCF-201ENST00000264010 TMEM238C9JI98 176 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 NBL1P41271 181 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 ZCCHC24Q8N2G6 241 aaKnown RBP13.42□□□□□ -0.26
CTCF-201ENST00000264010 GAFA1Q96PS6 74 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 FAM157AC9JC47 383 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 K7EM74 188 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 OPRK1P41145 380 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 UCNP55089 124 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 ZNF788Q6ZQV5 615 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 CLEC5AQ9NY25 188 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 CACNA1BQ00975 2339 aa13.42□□□□□ -0.26
CTCF-201ENST00000264010 DYSFO75923 2080 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 TEX50A0A1B0GTY4 177 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 GCSHP23434 173 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 CYP2G1PQ6ZSU1 146 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 CST9LQ9H4G1 147 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 NRN1Q9NPD7 142 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 C15orf62A8K5M9 175 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 FOXA3P55318 350 aaPredicted RBP13.41□□□□□ -0.26
CTCF-201ENST00000264010 OCIAD2Q56VL3 154 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 OR4P4Q8NGL7 312 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 A6NDN8 102 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 AGMATQ9BSE5 352 aa13.41□□□□□ -0.26
CTCF-201ENST00000264010 DEFA4P12838 97 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 ATP5IP56385 69 aaPredicted RBP13.4□□□□□ -0.26
CTCF-201ENST00000264010 TBR1Q16650 682 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 STPG4Q8N801 248 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 NHLRC2Q8NBF2 726 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 GAGE12BA1L429 117 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 H3BVH4 76 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 RRHO14718 337 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 TMPRSS3P57727 454 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 MOB3BQ86TA1 216 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 PRSS3P2Q8NHM4 247 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 OSR1Q8TAX0 266 aaPredicted RBP13.4□□□□□ -0.26
CTCF-201ENST00000264010 RPL8P62917 257 aaKnown RBP13.4□□□□□ -0.26
CTCF-201ENST00000264010 MPV17L2Q567V2 206 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 ODF3L1Q8IXM7 274 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 TMEM170AQ8WVE7 144 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 SNRNP40Q96DI7 357 aaKnown RBP13.4□□□□□ -0.26
CTCF-201ENST00000264010 TMEM167BQ9NRX6 74 aa13.4□□□□□ -0.26
CTCF-201ENST00000264010 C1QTNF9BB2RNN3 333 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 FAM87AP0C7U9 286 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 FA2HQ7L5A8 372 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 COX7A2P2O60397 106 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 APCSP02743 223 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 FABP2P12104 132 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 HTR1DP28221 377 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 ADMP35318 185 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 ADIPOQQ15848 244 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 MSMPQ1L6U9 139 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 TRAV3A0A0B4J244 114 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 CCL21O00585 134 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 CCL25O15444 150 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 OR1N2Q8NGR9 330 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 Q8TCH9 128 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 TMEM186Q96B77 213 aa13.39□□□□□ -0.27
CTCF-201ENST00000264010 PEF1Q9UBV8 284 aaKnown RBP13.39□□□□□ -0.27
CTCF-201ENST00000264010 ARL14EPLP0DKL9 152 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 SCGB1C2P0DMR2 95 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 HIST1H1EP10412 219 aaKnown RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 CCL3L1P16619 93 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 APOBEC3AP31941 199 aaPredicted RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 CDKN1AP38936 164 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 RPL23P62829 140 aaKnown RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 ZNF726P1Q15940 193 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 C5orf30Q96GV9 206 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 SSBP3Q9BWW4 388 aaPredicted RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 HSPB8Q9UJY1 196 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 IGHV1-69-2A0A0G2JMI3 117 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 B9A039 149 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 UPK2O00526 184 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 C1QTNF9P0C862 333 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 SRP14P37108 136 aaKnown RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 IL6RP08887 468 aaPredicted RBP13.38□□□□□ -0.27
CTCF-201ENST00000264010 MC5RP33032 325 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 LOXL3P58215 753 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 GNB1P62873 340 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 C17orf58Q2M2W7 97 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 SFTA2Q6UW10 78 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 OR4C13Q8NGP0 309 aa13.38□□□□□ -0.27
CTCF-201ENST00000264010 ZGRF1Q86YA3 2104 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms