RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RAX2Q96IS3 184 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 NDUFAF3Q9BU61 184 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 RNASE7Q9H1E1 156 aaKnown RBP8.96□□□□□ -0.97
CD44-201ENST00000263398 NRN1Q9NPD7 142 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 S4R3C0 116 aa8.96□□□□□ -0.97
CD44-201ENST00000263398 FNDC1Q4ZHG4 1894 aaPredicted RBP8.96□□□□□ -0.98
CD44-201ENST00000263398 EFNB3Q15768 340 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 FAM74A4Q5TZK3 123 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 LRRK1Q38SD2 2015 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 FER1L5A0AVI2 2057 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 CLPSP04118 112 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 NMSQ5H8A3 153 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 ZNF600Q6ZNG1 722 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 OCC1Q8TAD7 63 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 ARPC1AQ92747 370 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 C18orf15Q96N68 181 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 REG4Q9BYZ8 158 aa8.96□□□□□ -0.98
CD44-201ENST00000263398 ORMDL3Q8N138 153 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 PNRC2Q9NPJ4 139 aaKnown RBP8.95□□□□□ -0.98
CD44-201ENST00000263398 DOCK7Q96N67 2140 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 SRRM5B3KS81 715 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 OR9G9P0C7N8 305 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 ADIPOQQ15848 244 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 RRN3P1Q2M238 152 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TEX38Q6PEX7 206 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 PPP1R27Q86WC6 154 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 CHODLQ9H9P2 273 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 OTORQ9NRC9 128 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TMEM160Q9NX00 188 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 ABCA4P78363 2273 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 DOCK10Q96BY6 2186 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 SHANK1Q9Y566 2161 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 IGHV3-49A0A0A0MS15 119 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TRAV8-6A0A0B4J262 113 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 A0A1B0GW64 132 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 GPR183P32249 361 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 SRSF4Q08170 494 aaKnown RBP8.95□□□□□ -0.98
CD44-201ENST00000263398 ZNF56Q15929 161 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TCF23Q7RTU1 214 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TCRBV4S1A1TA0A5B7 111 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 QRFPP83859 136 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 FOXF2Q12947 444 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 CIRBPQ14011 172 aaKnown RBP8.95□□□□□ -0.98
CD44-201ENST00000263398 TMEM42Q69YG0 159 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TTC9CQ8N5M4 171 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 TMEM133Q9H2Q1 129 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 EPDR1Q9UM22 224 aa8.95□□□□□ -0.98
CD44-201ENST00000263398 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.95□□□□□ -0.98
CD44-201ENST00000263398 PCNX1Q96RV3 2341 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 TCF20Q9UGU0 1960 aaKnown RBP8.94□□□□□ -0.98
CD44-201ENST00000263398 M0R381 172 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 FER1L6-AS1Q8NA97 138 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 NEUROG1Q92886 237 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 VSIRQ9H7M9 311 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 IGHV1-18A0A0C4DH31 117 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 A0A0G2JLM5 398 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 PGPEP1LA6NFU8 196 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 SMIM13P0DJ93 91 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 PRSS8Q16651 343 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 SPRR3Q9UBC9 169 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 NOTCH4Q99466 2003 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 NBR2O15453 112 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 STAG3L3P0CL85 134 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 GCSAMLQ5JQS6 135 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 PVRIGQ6DKI7 326 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 TREML4Q6UXN2 200 aa8.94□□□□□ -0.98
CD44-201ENST00000263398 RPUSD1Q9UJJ7 312 aaKnown RBP8.94□□□□□ -0.98
CD44-201ENST00000263398 IGHV3OR16-12A0A075B7B8 117 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 IGHV3-23P01764 117 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 TFF1P04155 84 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 ADMP35318 185 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 ASIPP42127 132 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 GEMIN7Q9H840 131 aaKnown RBP8.93□□□□□ -0.98
CD44-201ENST00000263398 UBE2L6O14933 153 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 GLRX5Q86SX6 157 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 RPP25LQ8N5L8 163 aaKnown RBP8.93□□□□□ -0.98
CD44-201ENST00000263398 TMEM105Q8N8V8 129 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 HIST1H2BLQ99880 126 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 GGTLC1Q9BX51 225 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 IGHV3OR16-10A0A075B7F0 116 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 C5orf63A6NC05 138 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 PSPNO60542 156 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 CEACAM4O75871 244 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 C1QL4Q86Z23 238 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 ZNF257Q9Y2Q1 563 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 DOCK9Q9BZ29 2069 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 FABP5P3A8MUU1 101 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 ATXN7O15265 892 aaPredicted RBP8.93□□□□□ -0.98
CD44-201ENST00000263398 PYYP10082 97 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 TMEM14EPQ6UXP3 125 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 COPS9Q8WXC6 57 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 RNF125Q96EQ8 232 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 GNB1LQ9BYB4 327 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 LAMTOR2Q9Y2Q5 125 aa8.93□□□□□ -0.98
CD44-201ENST00000263398 PTPRDP23468 1912 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 MUC21A0A0G2JKD1 596 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 MUC21A0A140T8X8 626 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 MUC21Q5SSG8 566 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 CYB5R2Q6BCY4 276 aa8.92□□□□□ -0.98
CD44-201ENST00000263398 MYLKQ15746 1914 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms