RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZNF596Q8TC21 504 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 SLC25A2Q9BXI2 301 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 TMEM106BQ9NUM4 274 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 TP53TG3Q9ULZ0 132 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 WASHC3Q9Y3C0 194 aa13.29□□□□□ -0.28
HOXD3-201ENST00000249440 THBDP07204 575 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 UBE2L3P68036 154 aaKnown RBP13.28□□□□□ -0.28
HOXD3-201ENST00000249440 WT1-ASQ06250 92 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 COX19Q49B96 90 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 IBA57Q5T440 356 aaKnown RBP13.28□□□□□ -0.28
HOXD3-201ENST00000249440 WDR73Q6P4I2 378 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 OR1L4Q8NGR5 311 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 FAM167A-AS1Q96KT0 104 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 ARFGEF3Q5TH69 2177 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 A0A1B0GV90 55 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 COX7A2P2O60397 106 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 Q0VG73 95 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 DIAPH2-AS1Q14236 149 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 BAGE3Q86Y29 109 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 BAGE2Q86Y30 109 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 ST6GALNAC3Q8NDV1 305 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 OR5AU1Q8NGC0 362 aa13.28□□□□□ -0.28
HOXD3-201ENST00000249440 PCNX1Q96RV3 2341 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 ATRXP46100 2492 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 TNFRSF13BO14836 293 aaPredicted RBP13.27□□□□□ -0.28
HOXD3-201ENST00000249440 SERF1AO75920 110 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 IGLV2-8P01709 118 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 TDGF1P3P51864 188 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 LYPD2Q6UXB3 125 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 ST6GALNAC6Q969X2 333 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 IGF2BP2-AS1Q96M15 143 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 C2orf88Q9BSF0 95 aa13.27□□□□□ -0.28
HOXD3-201ENST00000249440 ZNF430Q9H8G1 570 aaPredicted RBP13.27□□□□□ -0.28
HOXD3-201ENST00000249440 NAV3Q8IVL0 2385 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 TRAV5A0A0B4J249 113 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 TCRBV4S1A1TA0A5B7 111 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 CGB1A6NKQ9 187 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 IGLV2-23P01705 113 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 MGST1P10620 155 aaKnown RBP13.27□□□□□ -0.29
HOXD3-201ENST00000249440 MC5RP33032 325 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 TAS2R60P59551 318 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 BPIFB3P59826 476 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 FXYD3Q14802 87 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 C1orf194Q5T5A4 169 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 MORN5Q5VZ52 161 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 C10orf113Q5VZT2 155 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 TGIF2LXQ8IUE1 241 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 FNDC4Q9H6D8 234 aaPredicted RBP13.27□□□□□ -0.29
HOXD3-201ENST00000249440 MSRB2Q9Y3D2 182 aa13.27□□□□□ -0.29
HOXD3-201ENST00000249440 FRMD6-AS1P0C7T7 363 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF137PP52743 207 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 USF2Q15853 346 aaPredicted RBP13.26□□□□□ -0.29
HOXD3-201ENST00000249440 VMA21Q3ZAQ7 101 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 NPIPB3Q92617 1050 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 RNASE6Q93091 150 aaKnown RBP13.26□□□□□ -0.29
HOXD3-201ENST00000249440 JKAMPQ9P055 326 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 NAT8BQ9UHF3 227 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 CDC42EP3Q9UKI2 254 aa13.26□□□□□ -0.29
HOXD3-201ENST00000249440 LINC00310P59036 64 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 C10orf55Q5SWW7 151 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SPACA3Q8IXA5 215 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 MISP3Q96FF7 219 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 ABHD17AQ96GS6 310 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF355PQ9NSJ1 428 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SH3BGRL2Q9UJC5 107 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 POLR3KQ9Y2Y1 108 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 TPRP12270 2363 aaKnown RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF705FA8MVS1 300 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SPINK4O60575 86 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF705DP0CH99 300 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 ZNF705BP0CI00 300 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SSTP61278 116 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SSBP2P81877 361 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 PAXXQ9BUH6 204 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SERTAD4Q9NUC0 356 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 KAAG1Q9UBP8 84 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 CTSZQ9UBR2 303 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 RAXQ9Y2V3 346 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 AMMECR1Q9Y4X0 333 aaPredicted RBP13.25□□□□□ -0.29
HOXD3-201ENST00000249440 PKDREJQ9NTG1 2253 aa13.25□□□□□ -0.29
HOXD3-201ENST00000249440 SMIM27A0A1W2PRY6 76 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 SNRPCP09234 159 aaKnown RBP13.24□□□□□ -0.29
HOXD3-201ENST00000249440 LOXP28300 417 aaPredicted RBP13.24□□□□□ -0.29
HOXD3-201ENST00000249440 GFRALQ6UXV0 394 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 THAP8Q8NA92 274 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 TBX15Q96SF7 602 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 SSUH2Q9Y2M2 353 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 SLC25A17O43808 307 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 LGALS7P47929 136 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 Q6ZWC4 215 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 SAMD10Q9BYL1 202 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 DYNLRB1Q9NP97 96 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 NGBQ9NPG2 151 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 KALRNO60229 2985 aa13.24□□□□□ -0.29
HOXD3-201ENST00000249440 TLN1Q9Y490 2541 aaKnown RBP13.23□□□□□ -0.29
HOXD3-201ENST00000249440 IGKV1D-37A0A075B6S9 117 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 PYYP10082 97 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 DLX6P56179 175 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 TMEM155Q4W5P6 130 aa13.23□□□□□ -0.29
HOXD3-201ENST00000249440 ETFRF1Q6IPR1 90 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms