RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NOTCH3Q9UM47 2321 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 TRAV40A0A0B4J280 105 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 TEX50A0A1B0GTY4 177 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 ARSJQ5FYB0 599 aaPredicted RBP6.96□□□□□ -1.3
VPS4B-201ENST00000238497 STPG3Q8N7X2 389 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 Q8WTZ3 238 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 MGST2Q99735 147 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 FBXL15Q9H469 300 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 H7BYZ3 331 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 FCN3O75636 299 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 VENTXO95231 258 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 GATA3P23771 443 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 SSX2Q16385 188 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 BSXQ3C1V8 233 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 C10orf91Q5T1B1 145 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 SLC25A48Q6ZT89 311 aaKnown RBP6.96□□□□□ -1.3
VPS4B-201ENST00000238497 C15orf54Q8N8G6 183 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 NPIPB3Q92617 1050 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 OR5B12Q96R08 314 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 C12orf57Q99622 126 aa6.96□□□□□ -1.3
VPS4B-201ENST00000238497 PSMG3Q9BT73 122 aaPredicted RBP6.96□□□□□ -1.3
VPS4B-201ENST00000238497 NCBP2LA6PVI3 153 aaKnown RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 J3QLI3 93 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 MOSP00540 346 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 MBP02144 154 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 IL6RP08887 468 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 CD81P60033 236 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 HEPN1Q6WQI6 88 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 C12orf54Q6X4T0 127 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 BRD3OSQ6XYD6 125 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 MIR17HGQ75NE6 70 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 NHLRC2Q8NBF2 726 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 BLNKQ8WV28 456 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 TMEM37Q8WXS4 190 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 ADTRPQ96IZ2 230 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 ELOVL1Q9BW60 279 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 SERTAD4Q9NUC0 356 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 PRNDQ9UKY0 176 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV3-35A0A0C4DH35 117 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 PMS2P5A8MQ11 134 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 MGST1P10620 155 aaKnown RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 SLC35B1P78383 322 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 EIF4EBP1Q13541 118 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 HABP2Q14520 560 aaPredicted RBP6.95□□□□□ -1.3
VPS4B-201ENST00000238497 PRR31Q5SQ13 230 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 FAM90A2PQ658T7 463 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 C16orf82Q7Z2V1 217 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 SPATA3Q8NHX4 192 aa6.95□□□□□ -1.3
VPS4B-201ENST00000238497 TRAV5A0A0B4J249 113 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 UPK2O00526 184 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 CGB3P0DN86 165 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 CGB7P0DN87 165 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 KIR2DS2P43631 304 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 SUMO1P63165 101 aaKnown RBP6.94□□□□□ -1.3
VPS4B-201ENST00000238497 BCL6BQ8N143 479 aaPredicted RBP6.94□□□□□ -1.3
VPS4B-201ENST00000238497 TCTEX1D1Q8N7M0 179 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 TMEM170AQ8WVE7 144 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 SLC35E1Q96K37 410 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 GGTLC1Q9BX51 225 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF430Q9H8G1 570 aaPredicted RBP6.94□□□□□ -1.3
VPS4B-201ENST00000238497 WDR83OSQ9Y284 106 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 WNK1Q9H4A3 2382 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV3OR16-8A0A075B7F1 116 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 CLDN34H7C241 214 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV1-8P0DP01 117 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV4-38-2P0DP08 117 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 MMDQ15546 238 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 SIGLECL1Q8N7X8 197 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 OR4C13Q8NGP0 309 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 OR1L8Q8NGR8 309 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 FAM210BQ96KR6 192 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 JMJD8Q96S16 334 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 SCO2A0A1W2PP80 73 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 H0YJW9 148 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 S100PP25815 95 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 VDAC2P45880 294 aaPredicted RBP6.94□□□□□ -1.3
VPS4B-201ENST00000238497 RND2P52198 227 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 LEMD1Q68G75 181 aa6.94□□□□□ -1.3
VPS4B-201ENST00000238497 SOX21Q9Y651 276 aaPredicted RBP6.94□□□□□ -1.3
VPS4B-201ENST00000238497 C22orf46C9J442 243 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 P0C879 139 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 SSBP2P81877 361 aaPredicted RBP6.93□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF90Q03938 601 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 VMA21Q3ZAQ7 101 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 KLF17Q5JT82 389 aaPredicted RBP6.93□□□□□ -1.3
VPS4B-201ENST00000238497 FAM209BQ5JX69 171 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 PRR27Q6MZM9 219 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 ZNF439Q8NDP4 499 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 MBD3L1Q8WWY6 194 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 NABP2Q9BQ15 211 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 METTL1Q9UBP6 276 aaKnown RBP6.93□□□□□ -1.3
VPS4B-201ENST00000238497 IGHV2-70DA0A0C4DH43 119 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 RBP4P02753 201 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 S100A2P29034 98 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 RAB4BP61018 213 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 TEX36Q5VZQ5 186 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 C3orf56Q8N813 242 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 OR1B1Q8NGR6 318 aa6.93□□□□□ -1.3
VPS4B-201ENST00000238497 WASHC3Q9Y3C0 194 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms