RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MFAP2P55001 183 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 HCP5Q6MZN7 132 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 TMEM136Q6ZRR5 245 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 OR4S2Q8NH73 311 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 IER2Q9BTL4 223 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 SLC25A2Q9BXI2 301 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 SERTAD4Q9NUC0 356 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 HELTA6NFD8 242 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 ZNF25P17030 456 aaPredicted RBP8.64□□□□□ -1.03
USP28-201ENST00000003302 KLF3P57682 345 aaPredicted RBP8.64□□□□□ -1.03
USP28-201ENST00000003302 BAGE3Q86Y29 109 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 BAGE2Q86Y30 109 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 IGKV1D-37A0A075B6S9 117 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 MMDQ15546 238 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 MRGPRG-AS1Q2M3A8 158 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 RPH3ALQ9UNE2 315 aa8.64□□□□□ -1.03
USP28-201ENST00000003302 FOXA2Q9Y261 457 aaPredicted RBP8.64□□□□□ -1.03
USP28-201ENST00000003302 A0A1W2PS18 150 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 SELENOTP62341 195 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 LINC00173Q6ZV60 143 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 TRAV8-1A0A0A6YYK1 113 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 C22orf46C9J442 243 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 IGF2BP2-AS1Q96M15 143 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 FSTL3O95633 263 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 GNG4P50150 75 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 NIT1Q86X76 327 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 BCL6BQ8N143 479 aaPredicted RBP8.63□□□□□ -1.03
USP28-201ENST00000003302 NPIPB3Q92617 1050 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 SLC35D1Q9NTN3 355 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 CFAP46Q8IYW2 2715 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 TGOLN2O43493 480 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 RHOBP62745 196 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 RPL8P62917 257 aaKnown RBP8.63□□□□□ -1.03
USP28-201ENST00000003302 CTSZQ9UBR2 303 aa8.63□□□□□ -1.03
USP28-201ENST00000003302 NTF3P20783 257 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 TNFAIP6P98066 277 aaPredicted RBP8.62□□□□□ -1.03
USP28-201ENST00000003302 C11orf52Q96A22 123 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 SLC25A33Q9BSK2 321 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 TRGV8A0A0C4DH27 118 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 CD99P14209 185 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 PRR30Q53SZ7 412 aaPredicted RBP8.62□□□□□ -1.03
USP28-201ENST00000003302 BLNKQ8WV28 456 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 NOL4LQ96MY1 436 aaPredicted RBP8.62□□□□□ -1.03
USP28-201ENST00000003302 CDC42EP3Q9UKI2 254 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 UPK2O00526 184 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 LY6HO94772 140 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 GPX1P07203 203 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 AREGP15514 252 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 ZNF138P52744 262 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 ZNF788Q6ZQV5 615 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 OR5AU1Q8NGC0 362 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 URB1-AS1Q96HZ7 61 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 HARBI1Q96MB7 349 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 TMEM208Q9BTX3 173 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 SFXN3Q9BWM7 321 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 S4R3C0 116 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 IGLV3-9A0A075B6K5 115 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 TRGV10A0A0A0MS01 117 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 A0A1W2PRD5 423 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 A0A1W2PRF3 423 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 A0A1W2PRM7 423 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 ZNF891A8MT65 544 aaPredicted RBP8.62□□□□□ -1.03
USP28-201ENST00000003302 SSTP61278 116 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 RANP62826 216 aaKnown RBP8.62□□□□□ -1.03
USP28-201ENST00000003302 PRCDQ00LT1 54 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 TEX43Q6ZNM6 134 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 BEND2Q8NDZ0 799 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 ST6GALNAC6Q969X2 333 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 SAMD10Q9BYL1 202 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 PLEKHA3Q9HB20 300 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 NRN1Q9NPD7 142 aa8.62□□□□□ -1.03
USP28-201ENST00000003302 AMTP48728 403 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 CAMPP49913 170 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 FOXA3P55318 350 aaPredicted RBP8.61□□□□□ -1.03
USP28-201ENST00000003302 DNLZQ5SXM8 178 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 SLC25A48Q6ZT89 311 aaKnown RBP8.61□□□□□ -1.03
USP28-201ENST00000003302 CCL17Q92583 94 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 BTF3L4Q96K17 158 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 SELENOKQ9Y6D0 94 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 HIVEP3Q5T1R4 2406 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 MPDU1O75352 247 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 TMEM249Q2WGJ8 235 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 IGFL2Q6UWQ7 119 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 RPUSD1Q9UJJ7 312 aaKnown RBP8.61□□□□□ -1.03
USP28-201ENST00000003302 CX3CL1P78423 397 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 TMEM200BQ69YZ2 307 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 STPG4Q8N801 248 aa8.61□□□□□ -1.03
USP28-201ENST00000003302 SLC25A17O43808 307 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 C3orf79P0CE67 100 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 GLRXP35754 106 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 IBA57Q5T440 356 aaKnown RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 PRSS33Q8NF86 280 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 SARAFQ96BY9 339 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 ZC2HC1AQ96GY0 325 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 ZNF430Q9H8G1 570 aaPredicted RBP8.6□□□□□ -1.03
USP28-201ENST00000003302 RPEL1Q2QD12 228 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 SPACA3Q8IXA5 215 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 CLEC5AQ9NY25 188 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 TRAV17A0A0B4J275 112 aa8.6□□□□□ -1.03
USP28-201ENST00000003302 MBD3L4A6NDZ8 208 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms