RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 OVOL2Q9BRP0 275 aa7.66□□□□□ -1.18
SCN1A-222ENST00000642141 C3orf85A0A1B0GTC6 90 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 TSPAN4O14817 238 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 ST8SIA3O43173 380 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 RAB3DO95716 219 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 SNCAP37840 140 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 ERHP84090 104 aaKnown RBP7.65□□□□□ -1.18
SCN1A-222ENST00000642141 ZNF124Q15973 351 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 MLANAQ16655 118 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 LAMTOR1Q6IAA8 161 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 LHFPL1Q86WI0 220 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 WFDC3Q8IUB2 231 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 SLC35G3Q8N808 338 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 TMEM229BQ8NBD8 167 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 TMEM116Q8NCL8 245 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 TERB2Q8NHR7 220 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 RNASE11Q8TAA1 199 aaKnown RBP7.65□□□□□ -1.18
SCN1A-222ENST00000642141 SPAG8Q99932 426 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-222ENST00000642141 RHPN1-AS1Q9BWJ2 59 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 MRPS26Q9BYN8 205 aaKnown RBP7.65□□□□□ -1.18
SCN1A-222ENST00000642141 FAM212BQ9NTI7 297 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-222ENST00000642141 SACSQ9NZJ4 4579 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 COPZ2Q9P299 210 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 SMPXQ9UHP9 88 aa7.65□□□□□ -1.18
SCN1A-222ENST00000642141 A0A0G2JRQ6 117 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 IGHV7-4-1A0A0J9YVY3 117 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 C15orf62A8K5M9 175 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 K7EMT4 169 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 CHEK1O14757 476 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 GNG7O60262 68 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 APOHP02749 345 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-222ENST00000642141 TAS2R19P59542 299 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 RND3P61587 244 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 RELQ04864 619 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-222ENST00000642141 DEFB135Q30KP9 77 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 ODF3L2Q3SX64 289 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 STEAP1BQ6NZ63 245 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 Q6ZRM9 215 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 CLVS1Q8IUQ0 354 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-222ENST00000642141 ARRDC1Q8N5I2 433 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 ZFAND1Q8TCF1 268 aa7.64□□□□□ -1.19
SCN1A-222ENST00000642141 NXF2Q9GZY0 626 aaKnown RBP7.64□□□□□ -1.19
SCN1A-222ENST00000642141 TRAV14DV4A0A0A6YYC5 116 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 A0A0J9YWU9 116 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 TEX13DA0A0J9YY54 714 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 NXPH3O95157 252 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 P0C879 139 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 ALDH3B2P48448 385 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 HOXA1P49639 335 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 RPL11P62913 178 aaKnown RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 EWSR1Q01844 656 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 PMS2P11Q13670 270 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 TOMM20LQ6UXN7 152 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 LILRB2Q8N423 598 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 ZNF114Q8NC26 417 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 RRNAD1Q96FB5 475 aaKnown RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 ZNF486Q96H40 463 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 RTBDNQ9BSG5 229 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 PRR13Q9NZ81 148 aa7.63□□□□□ -1.19
SCN1A-222ENST00000642141 MRPL36Q9P0J6 103 aaKnown RBP7.63□□□□□ -1.19
SCN1A-222ENST00000642141 HYDINQ4G0P3 5121 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 CXorf65A6NEN9 183 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 OR4C46A6NHA9 309 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 GABARAPH6UMI1 98 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 SPRY2O43597 315 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 CD74P04233 296 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 OR5AC1P0C628 307 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 RNASE2P10153 161 aaKnown RBP7.62□□□□□ -1.19
SCN1A-222ENST00000642141 TBPP20226 339 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 APOC4P55056 127 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 IL18Q14116 193 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 MEF2DQ14814 521 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 TCF24Q7RTU0 167 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 STPG3Q8N7X2 389 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 CCDC71LQ8N9Z2 235 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 DUSP18Q8NEJ0 188 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 IL17DQ8TAD2 202 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 ST8SIA2Q92186 375 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 DIRAS2Q96HU8 199 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 TXN2Q99757 166 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 PDCD10Q9BUL8 212 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 ENY2Q9NPA8 101 aa7.62□□□□□ -1.19
SCN1A-222ENST00000642141 C14orf166Q9Y224 244 aaKnown RBP7.62□□□□□ -1.19
SCN1A-222ENST00000642141 PUS1Q9Y606 427 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN1A-222ENST00000642141 A0A1B0GU03 582 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 DISC1C4P0D8 188 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 ATG12O94817 140 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 UCP1P25874 307 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 FCGR2BP31994 310 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-222ENST00000642141 NPBWR1P48145 328 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 OR51S1Q8NGJ8 323 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 OR4C16Q8NGL9 310 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 LHFPL5Q8TAF8 219 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 C15orf40Q8WUR7 153 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 OR10C1Q96KK4 312 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 ATP6V0BQ99437 205 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 C6orf62Q9GZU0 229 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-222ENST00000642141 TMEM222Q9H0R3 208 aa7.61□□□□□ -1.19
SCN1A-222ENST00000642141 FNDC4Q9H6D8 234 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-222ENST00000642141 DFFBO76075 338 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms