RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ETFRF1	Q6IPR1	90 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	TMEM86B	Q8N661	226 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	SIGLECL1	Q8N7X8	197 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	HSD17B11	Q8NBQ5	300 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	TAF15	Q92804	592 aa	Known RBP eCLIP	9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	FAM103A1	Q9BTL3	118 aa	Known RBP	9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	WDR61	Q9GZS3	305 aa	Known RBP	9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	WNT10A	Q9GZT5	417 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	NPVF	Q9HCQ7	196 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	PARP11	Q9NR21	331 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	VPREB3	Q9UKI3	123 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	FBXO7	Q9Y3I1	522 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	OTOG	Q6ZRI0	2925 aa		9.29	□□□□□ -0.92
CLN6-223	ENST00000637823	MPDU1	O75352	247 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	FBXO24	O75426	580 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	IGHG2	P01859	326 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	SPP1	P10451	314 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	DEFA4	P12838	97 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	ATP6V0C	P27449	155 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	CRIP2	P52943	208 aa	Predicted RBP	9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	MFAP2	P55001	183 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	AKIRIN2	Q53H80	203 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	ARSJ	Q5FYB0	599 aa	Predicted RBP	9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	RBMS3	Q6XE24	437 aa	Known RBP	9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	LFNG	Q8NES3	379 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	TMED6	Q8WW62	240 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	WDR83OS	Q9Y284	106 aa		9.28	□□□□□ -0.92
CLN6-223	ENST00000637823	UBE2L5P	A0A1B0GUS4	154 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	RPS10-NUDT3	A0A1W2PQS6	291 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SMCO3	A2RU48	225 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SH2D7	A6NKC9	451 aa	Predicted RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	LINC01548	A6NM66	108 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	ATP6V0E1	O15342	81 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	HOXA3	O43365	443 aa	Predicted RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	FGF7	P21781	194 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	RAB14	P61106	215 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	BLCAP	P62952	87 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	GAMT	Q14353	236 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	MLANA	Q16655	118 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	C9orf152	Q5JTZ5	239 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	UNQ5815/PRO19632	Q6UWF5	114 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	BTNL8	Q6UX41	500 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	TREML4	Q6UXN2	200 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SLC35E3	Q7Z769	313 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	CENPV	Q7Z7K6	275 aa	Predicted RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	OR5T1	Q8NG75	326 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	OR2G3	Q8NGZ4	309 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	FAM110D	Q8TAY7	271 aa	Predicted RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	LRRC20	Q8TCA0	184 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	MISP3	Q96FF7	219 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SLC35E1	Q96K37	410 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	PSMG3	Q9BT73	122 aa	Predicted RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SLC25A32	Q9H2D1	315 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	TIMM9	Q9Y5J7	89 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	SON	P18583	2426 aa	Known RBP	9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	CSMD1	Q96PZ7	3565 aa		9.27	□□□□□ -0.93
CLN6-223	ENST00000637823	ZNF469	Q96JG9	3925 aa	Predicted RBP	9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	C17orf112	F2Z3M2	114 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	IGF1	P05019	195 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	HIST1H1B	P16401	226 aa	Known RBP	9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	OPRK1	P41145	380 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	SERF2	P84101	59 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	AKR1C1	Q04828	323 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	RAB31	Q13636	194 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	KLK9	Q2XQG4	91 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	TEPP	Q6URK8	271 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	SLC16A13	Q7RTY0	426 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	TMEM144	Q7Z5S9	345 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	ZNF709	Q8N972	641 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	SMR3A	Q99954	134 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	SH3BGRL3	Q9H299	93 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	FNDC4	Q9H6D8	234 aa	Predicted RBP	9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	TNFRSF19	Q9NS68	423 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	CDC42EP3	Q9UKI2	254 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	KLK9	Q9UKQ9	250 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	LSM4	Q9Y4Z0	139 aa	Known RBP	9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	DMRT1	Q9Y5R6	373 aa		9.26	□□□□□ -0.93
CLN6-223	ENST00000637823	IGLV11-55	A0A075B6I3	123 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	TRAV41	A0A0B4J266	112 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	UMAD1	C9J7I0	102 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823		I3L2K1	104 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	AP4M1	O00189	453 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	FAM157C	P0CG43	387 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	SULT1A2	P50226	295 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	RAB5C	P51148	216 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	RUNX1	Q01196	453 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	ECSCR	Q19T08	205 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	C19orf54	Q5BKX5	351 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	C19orf35	Q6ZS72	473 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	OR2T6	Q8NHC8	308 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	RNF141	Q8WVD5	230 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	FANCD2OS	Q96PS1	177 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	RSG1	Q9BU20	258 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	PRSS22	Q9GZN4	317 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	THYN1	Q9P016	225 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823	ZNF580	Q9UK33	172 aa		9.25	□□□□□ -0.93
CLN6-223	ENST00000637823		G3V318	75 aa		9.24	□□□□□ -0.93
CLN6-223	ENST00000637823	TRIM77	I1YAP6	450 aa		9.24	□□□□□ -0.93
CLN6-223	ENST00000637823	SOX15	O60248	233 aa		9.24	□□□□□ -0.93
CLN6-223	ENST00000637823	MT-CO2	P00403	227 aa		9.24	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms