RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HOXA1P49639 335 aaPredicted RBP8.77□□□□□ -1.01
CLN3-257ENST00000637110 MFAP4P55083 255 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 SPSB3Q6PJ21 355 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 BTNL8Q6UX41 500 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 SLC16A13Q7RTY0 426 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 OR51S1Q8NGJ8 323 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 MARC2Q969Z3 335 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 SLIRPQ9GZT3 109 aaKnown RBP8.77□□□□□ -1.01
CLN3-257ENST00000637110 C19orf73Q9NVV2 129 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 MRPL27Q9P0M9 148 aaKnown RBP8.77□□□□□ -1.01
CLN3-257ENST00000637110 SCP2D1Q9UJQ7 156 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 CEPT1Q9Y6K0 416 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 IGHV3OR16-8A0A075B7F1 116 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 A8MWP6 167 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 A8MZ25 164 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 K7EIM0 57 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 NUPL2O15504 423 aaKnown RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 ST8SIA3O43173 380 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 ZNF207O43670 478 aaKnown RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 GSTZ1O43708 216 aaPredicted RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 MT-CO2P00403 227 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 IGHV3-48P01763 117 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 CD7P09564 240 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 UCP1P25874 307 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 ETV6P41212 452 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 SUB1P53999 127 aaKnown RBP eCLIP8.76□□□□□ -1.01
CLN3-257ENST00000637110 DHODHQ02127 395 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 SURF2Q15527 256 aaPredicted RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 PYDC2Q56P42 97 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 TMEM61Q8N0U2 210 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 DEFB125Q8N687 156 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 OR52B4Q8NGK2 314 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 SCGB3A2Q96PL1 93 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 RTBDNQ9BSG5 229 aaPredicted RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 THAP7Q9BT49 309 aaPredicted RBP8.76□□□□□ -1.01
CLN3-257ENST00000637110 CHRDL1Q9BU40 450 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 NAA60Q9H7X0 242 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 MLXQ9UH92 298 aa8.76□□□□□ -1.01
CLN3-257ENST00000637110 A0A0B4J293 547 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 ANKRD20A5PA0PJZ0 165 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 OR11H12B2RN74 326 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 NDUFA4O00483 81 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 GNG7O60262 68 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 FAUP35544 74 aaKnown RBP8.75□□□□□ -1.01
CLN3-257ENST00000637110 ELLP55199 621 aaPredicted RBP8.75□□□□□ -1.01
CLN3-257ENST00000637110 RELQ04864 619 aaPredicted RBP8.75□□□□□ -1.01
CLN3-257ENST00000637110 HAGHQ16775 308 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 ANKRD55Q3KP44 614 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 TMEM268Q5VZI3 342 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 TMEM190Q8WZ59 177 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 ZNF436Q9C0F3 470 aaPredicted RBP8.75□□□□□ -1.01
CLN3-257ENST00000637110 TMEM222Q9H0R3 208 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 C5orf66Q9H5L9 145 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 SRD5A3Q9H8P0 318 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 GPR132Q9UNW8 380 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 KCNIP3Q9Y2W7 256 aa8.75□□□□□ -1.01
CLN3-257ENST00000637110 HERC2O95714 4834 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 A0A0G2JRQ6 117 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 I3L2K1 104 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 CDS2O95674 445 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 AKR1C4P17516 323 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 LAMTOR1Q6IAA8 161 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 SELENOHQ8IZQ5 122 aaKnown RBP8.74□□□□□ -1.01
CLN3-257ENST00000637110 TOMM5Q8N4H5 51 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 ZNF114Q8NC26 417 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 DUSP18Q8NEJ0 188 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 RBPMSQ93062 196 aaKnown RBP8.74□□□□□ -1.01
CLN3-257ENST00000637110 ATP6V0BQ99437 205 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 TXN2Q99757 166 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 SPATA25Q9BR10 227 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 NXF2Q9GZY0 626 aaKnown RBP8.74□□□□□ -1.01
CLN3-257ENST00000637110 WFDC10AQ9H1F0 79 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 EDA2RQ9HAV5 297 aa8.74□□□□□ -1.01
CLN3-257ENST00000637110 DAZ1Q9NQZ3 744 aaKnown RBP8.74□□□□□ -1.01
CLN3-257ENST00000637110 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.74□□□□□ -1.01
CLN3-257ENST00000637110 TRAV25A0A0B4J276 109 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 CRYM-AS1A6NIL9 109 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 CEBPZOSA8MTT3 80 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 CORTO00230 105 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 CTSGP08311 255 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 ADMP35318 185 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 NPBWR1P48145 328 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 AP3S2P59780 193 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 FAM219AQ8IW50 185 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 GLYATL2Q8WU03 294 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 GPR146Q96CH1 333 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 TM2D3Q9BRN9 247 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 HEYLQ9NQ87 328 aaPredicted RBP8.73□□□□□ -1.01
CLN3-257ENST00000637110 CACNG5Q9UF02 275 aa8.73□□□□□ -1.01
CLN3-257ENST00000637110 IGHV3-49A0A0A0MS15 119 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 F8W735 103 aaPredicted RBP8.72□□□□□ -1.01
CLN3-257ENST00000637110 K7EMT4 169 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 NXPH3O95157 252 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 P0C879 139 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 C8orf88P0DMB2 117 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 ANXA3P12429 323 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 OPRK1P41145 380 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 INPP1P49441 399 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 SPCS3P61009 180 aa8.72□□□□□ -1.01
CLN3-257ENST00000637110 Q6ZRM9 215 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms