RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TIMM23O14925 209 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 COX7A2P2O60397 106 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TNFSF13O75888 250 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 OR9G9P0C7N8 305 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 IER3P46695 156 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TNFSF10P50591 281 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 KRTDAPP60985 99 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 RPL15P61313 204 aaKnown RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SELENOTP62341 195 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 Q0VG73 95 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 MORN2Q502X0 79 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 OR10J3Q5JRS4 329 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 COL5A1-AS1Q5SY13 56 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM144Q7Z5S9 345 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 S100A7AQ86SG5 101 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 OR2V2Q96R30 315 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 C20orf144Q9BQM9 153 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 HSPB9Q9BQS6 159 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 RNF7Q9UBF6 113 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF257Q9Y2Q1 563 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 USP24Q9UPU5 2620 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 YLPM1P49750 1951 aaKnown RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 SRRM5B3KS81 715 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 J3QR06 171 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ZNHIT1O43257 154 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 GHRHP01286 108 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CELA3BP08861 270 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 AMTP48728 403 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 PMCHL1Q16048 86 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 RASL11AQ6T310 242 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 LYG1Q8N1E2 194 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 RBMXL3Q8N7X1 1067 aaKnown RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 OR5B3Q8NH48 314 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CACNG8Q8WXS5 425 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 EAF1Q96JC9 268 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 MGST2Q99735 147 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 SPRR3Q9UBC9 169 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CLCF1Q9UBD9 225 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 KIR2DL5BA0A0G2JN68 375 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 KIR2DL5BA0A0G2JPC4 375 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 A0A1W2PRE2 83 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF253O75346 499 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 IGKV3-15P01624 115 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 IGHG3P01860 377 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 APCSP02743 223 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 OR10J4P0C629 311 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CECR9P0C854 216 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 C8orf88P0DMB2 117 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ADMP35318 185 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CFHR2P36980 270 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 VDAC2P45880 294 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 UBE2G1P62253 170 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 UBE2L3P68036 154 aaKnown RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 EIF4EBP1Q13541 118 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 EFNB3Q15768 340 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 KIR2DL5AQ8N109 375 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 PNKDQ8N490 385 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 OR1L8Q8NGR8 309 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 MSL2Q9HCI7 577 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 IDI2-AS1Q9NZ38 188 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 PI4KAP42356 2102 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 KIAA2026Q5HYC2 2103 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ATMQ13315 3056 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 IGHV2OR16-5A0A0B4J2B6 119 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 LINC00473A8K010 186 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 DIRC3C9JPN6 131 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 DLEU1O43261 78 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 MMP23AO75900 390 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ACTL6BO94805 426 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CA2P00918 260 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 TNFRSF1AP19438 455 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 BMP5P22003 454 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CBLN1P23435 193 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 HNRNPA3P51991 378 aaKnown RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 BATFQ16520 125 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CENPWQ5EE01 88 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CDPF1Q6NVV7 123 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 MOGAT3Q86VF5 341 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 OR8I2Q8N0Y5 310 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 ABHD12Q8N2K0 398 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 OCC1Q8TAD7 63 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 DAZAP1Q96EP5 407 aaKnown RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 NABP2Q9BQ15 211 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 CBLN4Q9NTU7 201 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 AURKAIP1Q9NWT8 199 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-214ENST00000637038 UQCR10Q9UDW1 63 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 GOLT1BQ9Y3E0 138 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 SHANK1Q9Y566 2161 aa3.28□□□□□ -1.88
SCN1A-214ENST00000637038 SPTAN1Q13813 2472 aaKnown RBP3.28□□□□□ -1.89
SCN1A-214ENST00000637038 KBTBD11-OT1A0A1B0GTJ5 212 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 C15orf65H3BRN8 121 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 M0R1B8 84 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ISLRO14498 428 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 HSBP1O75506 76 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 HIST1H1EP10412 219 aaKnown RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ZNF25P17030 456 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-214ENST00000637038 LGALS4P56470 323 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 ALKBH6Q3KRA9 238 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 VMA21Q3ZAQ7 101 aa3.27□□□□□ -1.89
SCN1A-214ENST00000637038 IBA57Q5T440 356 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms