RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 UBTD1Q9HAC8 227 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 INSIG2Q9Y5U4 225 aa12.62□□□□□ -0.39
CLN3-251ENST00000636853 IGHV1-3A0A0C4DH29 117 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 TSTD3H0UI37 97 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 ARF6P62330 175 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 ERHP84090 104 aaKnown RBP12.61□□□□□ -0.39
CLN3-251ENST00000636853 VMA21Q3ZAQ7 101 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 BEND2Q8NDZ0 799 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 OR4P4Q8NGL7 312 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 MANBALQ9NQG1 85 aa12.61□□□□□ -0.39
CLN3-251ENST00000636853 SOX15O60248 233 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 RBP4P02753 201 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 WT1-ASQ06250 92 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 RAB31Q13636 194 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 MRGPRG-AS1Q2M3A8 158 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 SPNS3Q6ZMD2 512 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 OR4F5Q8NH21 305 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 ABHD5Q8WTS1 349 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 OR4F4Q96R69 305 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 CHODLQ9H9P2 273 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 IGKV1OR2-108A0A075B7D4 117 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 DDTP30046 118 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 TAS2R60P59551 318 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 GAMTQ14353 236 aa12.6□□□□□ -0.39
CLN3-251ENST00000636853 NAV3Q8IVL0 2385 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 FNDC10F2Z333 226 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 LGALS7P47929 136 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 UBE2G2P60604 165 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 RPEQ96AT9 228 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 RPUSD4Q96CM3 377 aaKnown RBP12.59□□□□□ -0.39
CLN3-251ENST00000636853 C2orf88Q9BSF0 95 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 SSBP3Q9BWW4 388 aaPredicted RBP12.59□□□□□ -0.39
CLN3-251ENST00000636853 KCNIP2Q9NS61 270 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 A0A1W2PN81 502 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 REG1AP05451 166 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 ARL14EPLP0DKL9 152 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 CHRNA7P36544 502 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 RPL29P47914 159 aaKnown RBP12.59□□□□□ -0.39
CLN3-251ENST00000636853 RAB4BP61018 213 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 LDLRAD2Q5SZI1 272 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 SPATA31B1PQ5VZV4 182 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 TMEM144Q7Z5S9 345 aa12.59□□□□□ -0.39
CLN3-251ENST00000636853 SEPSECSQ9HD40 501 aaKnown RBP12.59□□□□□ -0.39
CLN3-251ENST00000636853 TRBV24-1A0A075B6N3 115 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 LOC105371242A0A075B767 164 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 LINC00869P0C866 280 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 GATA2P23769 480 aaPredicted RBP12.58□□□□□ -0.4
CLN3-251ENST00000636853 ATP5IP56385 69 aaPredicted RBP12.58□□□□□ -0.4
CLN3-251ENST00000636853 PRR20EP86478 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PRR20CP86479 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PRR20DP86480 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PRR20BP86481 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PRR20AP86496 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 CD69Q07108 199 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 OR2T6Q8NHC8 308 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 RNASEH2CQ8TDP1 164 aaKnown RBP12.58□□□□□ -0.4
CLN3-251ENST00000636853 SMIM7Q9BQ49 75 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 SDF2L1Q9HCN8 221 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 SLC45A2Q9UMX9 530 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 A0A1W2PPI3 338 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PHOX2AO14813 284 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 STAG3L2P0CL84 134 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 STAG3L3P0CL85 134 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 RD3LP0DJH9 198 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 CDPF1Q6NVV7 123 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 FAM210BQ96KR6 192 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 GPR61Q9BZJ8 451 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 PITPNC1Q9UKF7 332 aa12.58□□□□□ -0.4
CLN3-251ENST00000636853 TGIF2-C20orf24A0A0A6YYL0 155 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 C11orf94C9JXX5 98 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 INS-IGF2F8WCM5 200 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 LY6LH3BQJ8 138 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 IGHV3-48P01763 117 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 TRGC2P03986 189 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 OR10J1P30954 320 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 KLRD1Q13241 179 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 ZNF343Q6P1L6 599 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 IGFBPL1Q8WX77 278 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 ACY3Q96HD9 319 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 AMMECR1Q9Y4X0 333 aaPredicted RBP12.57□□□□□ -0.4
CLN3-251ENST00000636853 ACTL6BO94805 426 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 TRGC1P0CF51 173 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 APELAP0DMC3 54 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 GPR6P46095 362 aaPredicted RBP12.57□□□□□ -0.4
CLN3-251ENST00000636853 ATP5G3P48201 142 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 PSG5Q15238 335 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 PRSS8Q16651 343 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 CST9LP1Q5W188 147 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 TEX45Q8NA69 505 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 CTDSP1Q9GZU7 261 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 PARLQ9H300 379 aa12.57□□□□□ -0.4
CLN3-251ENST00000636853 TMEM250H0YL14 139 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 CLDN34H7C241 214 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 FOXH1O75593 365 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 CRYGBP07316 175 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 TNXAQ16473 311 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 TMEM249Q2WGJ8 235 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 NOL4LQ96MY1 436 aaPredicted RBP12.56□□□□□ -0.4
CLN3-251ENST00000636853 SIGLEC9Q9Y336 463 aa12.56□□□□□ -0.4
CLN3-251ENST00000636853 URGCP-MRPS24S4R325 110 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms