RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 TCTAP57738 103 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 C5orf47Q569G3 176 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF645Q8N7E2 425 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF502Q8TBZ5 544 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 TMEM54Q969K7 222 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 CNTRLQ7Z7A1 2325 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 MED12LQ86YW9 2145 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 M0QXV9 152 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 IGHG1P01857 330 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 NMUP48645 174 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 OSR1Q8TAX0 266 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 WIPF2Q8TF74 440 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 C11orf52Q96A22 123 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 MBD6Q96DN6 1003 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 AKIRIN1Q9H9L7 192 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 ASPMQ8IZT6 3477 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 CACNA1DQ01668 2161 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 TRIP6Q15654 476 aaKnown RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 ANXA2RQ3ZCQ2 193 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 TTC32Q5I0X7 151 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 WIPI1Q5MNZ9 446 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 LINC01545Q5VT33 79 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 ZADH2Q8N4Q0 377 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF441Q8N8Z8 693 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 RNF138Q8WVD3 245 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 SPANXA1Q9NS26 97 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 COL27A1Q8IZC6 1860 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PQM1 296 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 OR2J3O76001 311 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 CSN1S1P47710 185 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 INSL3P51460 131 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 PLP2Q04941 152 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 MFAP5Q13361 173 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 C1orf61Q13536 156 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 PSG5Q15238 335 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 TRAT1Q6PIZ9 186 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF611Q8N823 705 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 TEX45Q8NA69 505 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 GTSF1Q8WW33 167 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 NHP2Q9NX24 153 aaKnown RBP5.66□□□□□ -1.5
SCN1A-213ENST00000636759 IL36RNQ9UBH0 155 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 DUSP13Q9UII6 198 aa5.66□□□□□ -1.5
SCN1A-213ENST00000636759 EML6Q6ZMW3 1958 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 PRSS29PA6NIE9 313 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 FAM90A27PA6NNH2 459 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV1-5P01602 117 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 IL11P20809 199 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 ADIPOQQ15848 244 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 C3AR1Q16581 482 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 FAM120AOSQ5T036 256 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 SLC25A47Q6Q0C1 308 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 BCL6BQ8N143 479 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-213ENST00000636759 PPP1R35Q8TAP8 253 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 IL1F10Q8WWZ1 152 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 C12orf49Q9H741 205 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-213ENST00000636759 DEPPQ9NTK1 212 aa5.65□□□□□ -1.5
SCN1A-213ENST00000636759 FABP5P3A8MUU1 101 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 MS4A18H0YCH9 400 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 HSPB6O14558 160 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 TUSC2O75896 110 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 P04436 131 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 XGP55808 180 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 NXPH1P58417 271 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 MS4A18Q3C1V0 323 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 LYZL4Q96KX0 146 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 ZNF355PQ9NSJ1 428 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 LINC00312Q9Y6C7 94 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 A8MWL6 223 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 H0YIG0 161 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 MPDU1O75352 247 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 CSN3P07498 182 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 RBM11P57052 281 aaKnown RBP5.65□□□□□ -1.51
SCN1A-213ENST00000636759 FOXI1Q12951 378 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 FOXE3Q13461 319 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 ZNF718Q3SXZ3 478 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 SLC35E4Q6ICL7 350 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 PRELID3AQ96N28 172 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 WDR83OSQ9Y284 106 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 MPC1Q9Y5U8 109 aa5.65□□□□□ -1.51
SCN1A-213ENST00000636759 MYO7BQ6PIF6 2116 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 RALGAPA1Q6GYQ0 2036 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 TRAV5A0A0B4J249 113 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-213ENST00000636759 NTF4P34130 210 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 GAGE2BQ13066 116 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 GAGE2EQ4V326 116 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 MIC13Q5XKP0 118 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 DTX1Q86Y01 620 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 FGFRL1Q8N441 504 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 ZBTB34Q8NCN2 500 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 GAGE2DQ9UEU5 116 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 VPREB3Q9UKI3 123 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 ATP23Q9Y6H3 246 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 C5orf63A6NC05 138 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 LMO7DNF2Z398 122 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 K7ERJ3 54 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 M0R135 149 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 CHEK1O14757 476 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms