RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ST6GALNAC6Q969X2 333 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 ELOVL1Q9BW60 279 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 BET1LQ9NYM9 111 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 NAT8Q9UHE5 227 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 IGHV3-21A0A0B4J1V1 117 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 SEC14L6B5MCN3 397 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 RNASE2P10153 161 aaKnown RBP8.59□□□□□ -1.03
CUX1-221ENST00000622516 UCNP55089 124 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 WT1-ASQ06250 92 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 BSXQ3C1V8 233 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 MIR17HGQ75NE6 70 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 LHFPL4Q7Z7J7 247 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 NEIL1Q96FI4 390 aaPredicted RBP8.59□□□□□ -1.03
CUX1-221ENST00000622516 TMEM133Q9H2Q1 129 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 MANBALQ9NQG1 85 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 KAAG1Q9UBP8 84 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 A0A1W2PRD5 423 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 A0A1W2PRF3 423 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 A0A1W2PRM7 423 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CGB1A6NKQ9 187 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CLDN34H7C241 214 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 SOD3P08294 240 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 OR10J1P30954 320 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 RUSC1-AS1Q66K80 236 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 HCP5Q6MZN7 132 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 SSX8Q7RTT4 187 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 TMEM186Q96B77 213 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 NDUFA4L2Q9NRX3 87 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 ZNF257Q9Y2Q1 563 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 STAG3L2P0CL84 134 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 STAG3L3P0CL85 134 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CHRNA7P36544 502 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 PNRC1Q12796 327 aaPredicted RBP8.58□□□□□ -1.04
CUX1-221ENST00000622516 ODF1Q14990 250 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 ZNF841Q6ZN19 808 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CYP2G1PQ6ZSU1 146 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 ZNF114Q8NC26 417 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 YTHDF2Q9Y5A9 579 aaKnown RBP8.58□□□□□ -1.04
CUX1-221ENST00000622516 CELSR2Q9HCU4 2923 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CENPEQ02224 2701 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CACNA1AO00555 2505 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 IGHV2-26A0A0B4J1V2 119 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 PPIAL4CA0A0B4J2A2 164 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 TMEM250H0YL14 139 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 IGLV2-23P01705 113 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 PPIAL4GP0DN37 164 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 CD24P25063 80 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 NDUFA6P56556 154 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 TMEM177Q53S58 311 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 PDZD11Q5EBL8 140 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 OR5B3Q8NH48 314 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 FAM210BQ96KR6 192 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 SIRT7Q9NRC8 400 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 DOK5Q9P104 306 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 ONECUT1Q9UBC0 465 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 WASHC3Q9Y3C0 194 aa8.58□□□□□ -1.04
CUX1-221ENST00000622516 SCO2A0A1W2PP80 73 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 B4DEV8 164 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 IGHV2-5P01817 119 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 OR10J4P0C629 311 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 LINC00869P0C866 280 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 PPOXP50336 477 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 RAB31Q13636 194 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 TMEM30BQ3MIR4 351 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 OR1L8Q8NGR8 309 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 MRPL36Q9P0J6 103 aaKnown RBP8.57□□□□□ -1.04
CUX1-221ENST00000622516 AP4M1O00189 453 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 NDUFS7O75251 213 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 NUTF2P61970 127 aaKnown RBP8.57□□□□□ -1.04
CUX1-221ENST00000622516 ARF6P62330 175 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 PMS2P11Q13670 270 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 ETFRF1Q6IPR1 90 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 MISP3Q96FF7 219 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 FNDC4Q9H6D8 234 aaPredicted RBP8.57□□□□□ -1.04
CUX1-221ENST00000622516 FKBP11Q9NYL4 201 aa8.57□□□□□ -1.04
CUX1-221ENST00000622516 TRBV20OR9-2A0A075B6H5 130 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 A0A1W2PPR1 153 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 CXorf65A6NEN9 183 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 CXorf1O96002 111 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 GCHFRP30047 84 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 MAS1LP35410 378 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 ERHP84090 104 aaKnown RBP8.56□□□□□ -1.04
CUX1-221ENST00000622516 PRR20EP86478 221 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PRR20CP86479 221 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PRR20DP86480 221 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PRR20BP86481 221 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PRR20AP86496 221 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 MALSU1Q96EH3 234 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 TRAV5A0A0B4J249 113 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 USF1P22415 310 aaPredicted RBP8.56□□□□□ -1.04
CUX1-221ENST00000622516 RPL29P47914 159 aaKnown RBP8.56□□□□□ -1.04
CUX1-221ENST00000622516 ZNF90Q03938 601 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 FBXL19-AS1Q494R0 122 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 C2orf83Q53S99 150 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 GFI1BQ5VTD9 330 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 MORN5Q5VZ52 161 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PDPNQ86YL7 162 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 PNKDQ8N490 385 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 RAB1CQ92928 201 aa8.56□□□□□ -1.04
CUX1-221ENST00000622516 UHRF2Q96PU4 802 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms