RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 HECTD1Q9ULT8 2610 aa12.71□□□□□ -0.37
CPSF1-213ENST00000620219 AREGP15514 252 aa12.71□□□□□ -0.37
CPSF1-213ENST00000620219 SLC35E3Q7Z769 313 aa12.71□□□□□ -0.37
CPSF1-213ENST00000620219 COMMD1Q8N668 190 aa12.71□□□□□ -0.37
CPSF1-213ENST00000620219 FOXA2Q9Y261 457 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-213ENST00000620219 FLNBO75369 2602 aaKnown RBP12.71□□□□□ -0.37
CPSF1-213ENST00000620219 IGHV4-30-2A0A087WSY4 118 aa12.71□□□□□ -0.38
CPSF1-213ENST00000620219 C7orf77A4D0Y5 90 aa12.71□□□□□ -0.38
CPSF1-213ENST00000620219 H3BTX0 84 aa12.71□□□□□ -0.38
CPSF1-213ENST00000620219 FCN1O00602 326 aa12.71□□□□□ -0.38
CPSF1-213ENST00000620219 EAF1Q96JC9 268 aaPredicted RBP12.71□□□□□ -0.38
CPSF1-213ENST00000620219 RBM14Q96PK6 669 aaKnown RBP12.71□□□□□ -0.38
CPSF1-213ENST00000620219 RPL11P62913 178 aaKnown RBP12.7□□□□□ -0.38
CPSF1-213ENST00000620219 PRSS8Q16651 343 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 MARVELD3Q96A59 401 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 M0R1W7 72 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 MGST1P10620 155 aaKnown RBP12.7□□□□□ -0.38
CPSF1-213ENST00000620219 SPNS3Q6ZMD2 512 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 FAM24BQ8N5W8 94 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 THYN1Q9P016 225 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 IGHV2-5P01817 119 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 GATAD1Q8WUU5 269 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 OR2J3O76001 311 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 UBE2L3P68036 154 aaKnown RBP12.7□□□□□ -0.38
CPSF1-213ENST00000620219 TMEM177Q53S58 311 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 OR5B12Q96R08 314 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 WNT10AQ9GZT5 417 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 SIGLEC9Q9Y336 463 aa12.7□□□□□ -0.38
CPSF1-213ENST00000620219 IL6RP08887 468 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-213ENST00000620219 GSX1Q9H4S2 264 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-213ENST00000620219 C11orf94C9JXX5 98 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 DLK1P80370 383 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 CR1LQ2VPA4 569 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 TREML4Q6UXN2 200 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 RPP25LQ8N5L8 163 aaKnown RBP12.69□□□□□ -0.38
CPSF1-213ENST00000620219 SMCO4Q9NRQ5 59 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 RAI1Q7Z5J4 1906 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-213ENST00000620219 RNF224P0DH78 156 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 RPS10P46783 165 aaKnown RBP12.69□□□□□ -0.38
CPSF1-213ENST00000620219 ZNF841Q6ZN19 808 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 TMEM167AQ8TBQ9 72 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 SLC25A33Q9BSK2 321 aa12.69□□□□□ -0.38
CPSF1-213ENST00000620219 H3BQ15 152 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 PAX5Q02548 391 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 CFAP46Q8IYW2 2715 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 J3QKU1 62 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 VENTXO95231 258 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 DUX5Q96PT3 197 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 WNK1Q9H4A3 2382 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 MPDU1O75352 247 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 OR2C1O95371 312 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 ARL14EPLP0DKL9 152 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 C10orf113Q5VZT2 155 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 KIR3DL3Q8N743 410 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 OR52E5Q8NH55 327 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 C17orf50Q8WW18 174 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 IGHV2-70DA0A0C4DH43 119 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 BCL2P10415 239 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 C11orf71Q6IPW1 123 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 TEX45Q8NA69 505 aa12.68□□□□□ -0.38
CPSF1-213ENST00000620219 PSMG3Q9BT73 122 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-213ENST00000620219 ASH1LQ9NR48 2969 aaKnown RBP12.67□□□□□ -0.38
CPSF1-213ENST00000620219 BEND2Q8NDZ0 799 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 TMEM14BQ9NUH8 114 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 SLC45A2Q9UMX9 530 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 FABP1P07148 127 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 PRB4P10163 310 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-213ENST00000620219 C11orf1Q9H5F2 150 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 A0A1W2PPI3 338 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 CMTM2Q8TAZ6 248 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 ARPC1AQ92747 370 aa12.67□□□□□ -0.38
CPSF1-213ENST00000620219 JMJD1CQ15652 2540 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 FAM90A9PA6NNJ1 464 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 NPFFO15130 113 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 SSTP61278 116 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 SSX7Q7RTT5 188 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 DDB2Q92466 427 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 VAX2Q9UIW0 290 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 WDR83OSQ9Y284 106 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 HIVEP2P31629 2446 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 IGHV3OR16-13A0A075B7E8 117 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 IGHV3-74A0A0B4J1X5 117 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 TSPAN9O75954 239 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 S100PP25815 95 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 LINC00311Q8N616 119 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 SSX3Q99909 188 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 TECRQ9NZ01 308 aaKnown RBP12.66□□□□□ -0.38
CPSF1-213ENST00000620219 ZNF257Q9Y2Q1 563 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 IGKV3-7A0A075B6H7 116 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 CD5P06127 495 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 Q8N7P7 452 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 P2RX4Q99571 388 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 B4DSR2 109 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 SPSB3Q6PJ21 355 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 TOLLIPQ9H0E2 274 aa12.66□□□□□ -0.38
CPSF1-213ENST00000620219 PCP4L1A6NKN8 68 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 PF4V1P10720 104 aa12.65□□□□□ -0.38
CPSF1-213ENST00000620219 RPL35P42766 123 aaKnown RBP12.65□□□□□ -0.38
CPSF1-213ENST00000620219 SUMO1P63165 101 aaKnown RBP12.65□□□□□ -0.38
CPSF1-213ENST00000620219 PRR27Q6MZM9 219 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms