RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GPN1Q9HCN4 374 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 ENY2Q9NPA8 101 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 G3V4G9 280 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 PITX3O75364 302 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 IGHV3-23P01764 117 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 HNRNPCP07910 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 SNCAP37840 140 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 FAM209BQ5JX69 171 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 GGNBP1Q5YKI7 109 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 OR1S1Q8NH92 325 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 MITD1Q8WV92 249 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 DCUN1D4Q92564 292 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 EEF1AKMT3Q96AZ1 226 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 HSPB7Q9UBY9 170 aa12.72□□□□□ -0.37
CCDC28A-202ENST00000611852 BMPR1BO00238 502 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 ADAP1O75689 374 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 ZP3P21754 424 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 RRAS2P62070 204 aaPredicted RBP12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 TNFRSF9Q07011 255 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 ZNF502Q8TBZ5 544 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 VN1R17PQ8TDU5 208 aa12.71□□□□□ -0.38
CCDC28A-202ENST00000611852 TRBV7-1A0A0A6YYK4 115 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 CEBPZOSA8MTT3 80 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 K7EIM0 57 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 IL5P05113 134 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 RNASE2P10153 161 aaKnown RBP12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 BSXQ3C1V8 233 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 PVRIGQ6DKI7 326 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 CLEC19AQ6UXS0 136 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 C1QL4Q86Z23 238 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 SCARB1Q8WTV0 552 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 SEC22CQ9BRL7 303 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 MCRIP2Q9BUT9 160 aaKnown RBP12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 MED28Q9H204 178 aa12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 HEYLQ9NQ87 328 aaPredicted RBP12.7□□□□□ -0.38
CCDC28A-202ENST00000611852 IGHV3-21A0A0B4J1V1 117 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 MPTX1A8MV57 137 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 PPP5D1E7EU14 171 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 OVOL1O14753 267 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 CCNKO75909 580 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 SUB1P53999 127 aaKnown RBP eCLIP12.69□□□□□ -0.381e-9■■■■□ 24.9
CCDC28A-202ENST00000611852 KLF5Q13887 457 aaPredicted RBP12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 ZNF431Q8TF32 576 aaPredicted RBP12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 MISP3Q96FF7 219 aa12.69□□□□□ -0.38
CCDC28A-202ENST00000611852 SNRPGP15A8MWD9 76 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 I3L2K1 104 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 SSNA1O43805 119 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 IFNA21P01568 189 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 CLEC3BP05452 202 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 RPEL1Q2QD12 228 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 C11orf87Q6NUJ2 197 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 HIPK2Q9H2X6 1198 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 RBKSQ9H477 322 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 C21orf62Q9NYP8 219 aa12.68□□□□□ -0.38
CCDC28A-202ENST00000611852 FAM90A26D6RGX4 464 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 ARL3P36405 182 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 HTR2BP41595 481 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 DTD1Q8TEA8 209 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 PINX1Q96BK5 328 aaKnown RBP12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 SEC14L6B5MCN3 397 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 GGCTO75223 188 aaKnown RBP12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 MT-CO2P00403 227 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 GPR183P32249 361 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 SYNJ2BPP57105 145 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 BEAN1Q3B7T3 259 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 C2orf83Q53S99 150 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 KPRPQ5T749 579 aaPredicted RBP12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 SLC24A4Q8NFF2 622 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 GPR61Q9BZJ8 451 aa12.67□□□□□ -0.38
CCDC28A-202ENST00000611852 F8W735 103 aaPredicted RBP12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 BOLA2-SMG1P6H3BVE0 249 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 CORTO00230 105 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 WIPF1O43516 503 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 OR2C1O95371 312 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 ACSM6Q6P461 480 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 C12orf45Q8N5I9 185 aaPredicted RBP12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 TMEM170AQ8WVE7 144 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 OR10C1Q96KK4 312 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 ATP6V0BQ99437 205 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 ZC4H2Q9NQZ6 224 aa12.66□□□□□ -0.38
CCDC28A-202ENST00000611852 OR2T8A6NH00 312 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 IGHV3-48P01763 117 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 ID3Q02535 119 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 C9orf66Q5T8R8 295 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 UXS1Q8NBZ7 420 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 OR4D5Q8NGN0 318 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 U3KQ87 197 aa12.65□□□□□ -0.38
CCDC28A-202ENST00000611852 TGOLN2O43493 480 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 MED6O75586 246 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 NPY1RP25929 384 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 FCGR2BP31994 310 aaPredicted RBP12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 CD300CQ08708 224 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 IAH1Q2TAA2 248 aaPredicted RBP12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 Q56UQ5 140 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 GPHB5Q86YW7 130 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 UBAC2Q8NBM4 344 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 OR9G4Q8NGQ1 327 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 BSCL2Q96G97 398 aaPredicted RBP12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 MAGT1Q9H0U3 335 aa12.64□□□□□ -0.39
CCDC28A-202ENST00000611852 FNDC4Q9H6D8 234 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms