RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 UBE2CO00762 179 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 RAB3DO95716 219 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 SNCAP37840 140 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 AKR1C2P52895 323 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 APOC4P55056 127 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 CMC4P56277 68 aaPredicted RBP11.76□□□□□ -0.53
VRK3-221ENST00000600284 STEAP1BQ6NZ63 245 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 ZNF414Q96IQ9 312 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 OVOL2Q9BRP0 275 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 MIXL1Q9H2W2 232 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 RABL2AQ9UBK7 228 aaPredicted RBP11.76□□□□□ -0.53
VRK3-221ENST00000600284 RABL2BQ9UNT1 228 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 TP53TG1Q9Y2A0 90 aa11.76□□□□□ -0.53
VRK3-221ENST00000600284 KIR2DL5BA0A0G2JN68 375 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 KIR2DL5BA0A0G2JPC4 375 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 CORTO00230 105 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 CHEK1O14757 476 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 RGS5O15539 181 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 GNG7O60262 68 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 CD5P06127 495 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 CTSDP07339 412 aaPredicted RBP11.75□□□□□ -0.53
VRK3-221ENST00000600284 UCP1P25874 307 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 NPBWR1P48145 328 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 SUB1P53999 127 aaKnown RBP eCLIP11.75□□□□□ -0.53
VRK3-221ENST00000600284 MEF2DQ14814 521 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 SCGB2B2Q4G0G5 96 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 PVRIGQ6DKI7 326 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 Q6ZWC4 215 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 WFDC3Q8IUB2 231 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 KIR2DL5AQ8N109 375 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 SLC35G3Q8N808 338 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 TMEM116Q8NCL8 245 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 DUSP18Q8NEJ0 188 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 OR4D10Q8NGI6 311 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 KIR2DL5BQ8NHK3 375 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 RRNAD1Q96FB5 475 aaKnown RBP11.75□□□□□ -0.53
VRK3-221ENST00000600284 PDCD10Q9BUL8 212 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 RHPN1-AS1Q9BWJ2 59 aa11.75□□□□□ -0.53
VRK3-221ENST00000600284 IGHV3OR16-8A0A075B7F1 116 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 TRAV14DV4A0A0A6YYC5 116 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 CTDSP2O14595 271 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 ST8SIA3O43173 380 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 ZNF207O43670 478 aaKnown RBP11.74□□□□□ -0.53
VRK3-221ENST00000600284 YIF1AO95070 293 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 IFNA17P01571 189 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 PPP5CP53041 499 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 SURF2Q15527 256 aaPredicted RBP11.74□□□□□ -0.53
VRK3-221ENST00000600284 IZUMO4Q1ZYL8 232 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 TRIM16LQ309B1 348 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 ODF3L2Q3SX64 289 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 FAM219AQ8IW50 185 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 OR13C8Q8NGS7 320 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 PINX1Q96BK5 328 aaKnown RBP11.74□□□□□ -0.53
VRK3-221ENST00000600284 RNF2Q99496 336 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 BCL7BQ9BQE9 202 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 UBQLN2Q9UHD9 624 aa11.74□□□□□ -0.53
VRK3-221ENST00000600284 CTDSPLO15194 276 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 BMI1P35226 326 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 SPCS2Q15005 226 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 SP6Q3SY56 376 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 MARCH1Q8TCQ1 289 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 RAB2BQ8WUD1 216 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 SMIM4Q8WVI0 70 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 GALNT14Q96FL9 552 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 GINS3Q9BRX5 216 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 TMEM222Q9H0R3 208 aa11.73□□□□□ -0.53
VRK3-221ENST00000600284 C14orf166Q9Y224 244 aaKnown RBP11.73□□□□□ -0.53
VRK3-221ENST00000600284 DISC1C4P0D8 188 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 CDS2O95674 445 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 RPL5P46777 297 aaKnown RBP11.72□□□□□ -0.53
VRK3-221ENST00000600284 TMBIM6P55061 237 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 AARDQ4LEZ3 155 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 SPINK9Q5DT21 86 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 STPG3Q8N7X2 389 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 OR52E5Q8NH55 327 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 RTBDNQ9BSG5 229 aaPredicted RBP11.72□□□□□ -0.53
VRK3-221ENST00000600284 C6orf62Q9GZU0 229 aaPredicted RBP11.72□□□□□ -0.53
VRK3-221ENST00000600284 ENY2Q9NPA8 101 aa11.72□□□□□ -0.53
VRK3-221ENST00000600284 TEX13DA0A0J9YY54 714 aaPredicted RBP11.71□□□□□ -0.53
VRK3-221ENST00000600284 SPRY2O43597 315 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 JTBO76095 146 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 TMEM50AO95807 157 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 IGHV3-48P01763 117 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 AKAIN1P0CW23 69 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 RNASE2P10153 161 aaKnown RBP11.71□□□□□ -0.53
VRK3-221ENST00000600284 ETV6P41212 452 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 HOXA1P49639 335 aaPredicted RBP11.71□□□□□ -0.53
VRK3-221ENST00000600284 PAFAH1B2P68402 229 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 DHODHQ02127 395 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 FAM90A2PQ658T7 463 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 TOMM20LQ6UXN7 152 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 ZNF600Q6ZNG1 722 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 RNASE11Q8TAA1 199 aaKnown RBP11.71□□□□□ -0.53
VRK3-221ENST00000600284 DIRAS2Q96HU8 199 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 CCDC59Q9P031 241 aaKnown RBP11.71□□□□□ -0.53
VRK3-221ENST00000600284 GPR132Q9UNW8 380 aa11.71□□□□□ -0.53
VRK3-221ENST00000600284 A0A0G2JRQ6 117 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 SCGB2A1O75556 95 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 OR5AC1P0C628 307 aa11.7□□□□□ -0.54
VRK3-221ENST00000600284 SPCS3P61009 180 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms