RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ACY3Q96HD9 319 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 FBXL15Q9H469 300 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 SIGLEC9Q9Y336 463 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 HILPDAQ9Y5L2 63 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 TMEM250H0YL14 139 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 FCN1O00602 326 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 CXCL1P09341 107 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 FOLR2P14207 255 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 CD24P25063 80 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 MFAP2P55001 183 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 RAB31Q13636 194 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 TMEM249Q2WGJ8 235 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 CST9LP1Q5W188 147 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 MIR17HGQ75NE6 70 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 Q8WTZ3 238 aa11.6□□□□□ -0.55
VRK3-217ENST00000599538 A6NNC1 897 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 TIMM23O14925 209 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 GPR6P46095 362 aaPredicted RBP11.59□□□□□ -0.55
VRK3-217ENST00000599538 GNB1P62873 340 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 ELOBQ15370 118 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 FAM78BQ5VT40 261 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 TEX45Q8NA69 505 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 DERL1Q9BUN8 251 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 SAV1Q9H4B6 383 aaPredicted RBP11.59□□□□□ -0.55
VRK3-217ENST00000599538 METTL1Q9UBP6 276 aaKnown RBP11.59□□□□□ -0.55
VRK3-217ENST00000599538 VPS13CQ709C8 3753 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 ZFYVE26Q68DK2 2539 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 ATP5IP56385 69 aaPredicted RBP11.59□□□□□ -0.55
VRK3-217ENST00000599538 KCNIP2Q9NS61 270 aa11.59□□□□□ -0.55
VRK3-217ENST00000599538 YTHDF2Q9Y5A9 579 aaKnown RBP11.59□□□□□ -0.55
VRK3-217ENST00000599538 USP9XQ93008 2570 aaPredicted RBP11.58□□□□□ -0.56
VRK3-217ENST00000599538 CXorf1O96002 111 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 AGAP20933 346 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 RHOBP62745 196 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 RPL23P62829 140 aaKnown RBP11.58□□□□□ -0.56
VRK3-217ENST00000599538 PNRC1Q12796 327 aaPredicted RBP11.58□□□□□ -0.56
VRK3-217ENST00000599538 ADIRFQ15847 76 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 RNF212Q495C1 297 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 TPTE2P1Q5T6R2 138 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 CYP2G1PQ6ZSU1 146 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 PPP1R27Q86WC6 154 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 MMD2Q8IY49 270 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 OR11H6Q8NGC7 330 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 NPIPB3Q92617 1050 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 NAT8Q9UHE5 227 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 USP24Q9UPU5 2620 aa11.58□□□□□ -0.56
VRK3-217ENST00000599538 TGIF2-C20orf24A0A0A6YYL0 155 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 VENTXO95231 258 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 CTRB1P17538 263 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 HTR1DP28221 377 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 GCHFRP30047 84 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 MAS1LP35410 378 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 RPL27AP46776 148 aaKnown RBP11.57□□□□□ -0.56
VRK3-217ENST00000599538 TMEM241Q24JQ0 296 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 MORN5Q5VZ52 161 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 CTRB2Q6GPI1 263 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 TMEM37Q8WXS4 190 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 CACNG8Q8WXS5 425 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 AMMECR1Q9Y4X0 333 aaPredicted RBP11.57□□□□□ -0.56
VRK3-217ENST00000599538 IGKV1D-37A0A075B6S9 117 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 IGHV3-21A0A0B4J1V1 117 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 PRTN3P24158 256 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 COMPP49747 757 aaPredicted RBP11.57□□□□□ -0.56
VRK3-217ENST00000599538 ZNF90Q03938 601 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 ZNF503Q96F45 646 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 AURKAIP1Q9NWT8 199 aaPredicted RBP11.57□□□□□ -0.56
VRK3-217ENST00000599538 DPM3Q9P2X0 92 aa11.57□□□□□ -0.56
VRK3-217ENST00000599538 B4DEV8 164 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 TEX22C9J3V5 150 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 NDUFB4O95168 129 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 GPX4P36969 197 aaPredicted RBP11.56□□□□□ -0.56
VRK3-217ENST00000599538 LCN2P80188 198 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 DYNAPQ8N1N2 210 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 CFHR4Q92496 578 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 SLC35E1Q96K37 410 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 PGPEP1LA6NFU8 196 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 ODF3BA8MYP8 253 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 M0R1W7 72 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 RNF224P0DH78 156 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 VMO1Q7Z5L0 202 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 RNASEH2CQ8TDP1 164 aaKnown RBP11.56□□□□□ -0.56
VRK3-217ENST00000599538 MISP3Q96FF7 219 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 FUT9Q9Y231 359 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 DMRT1Q9Y5R6 373 aa11.56□□□□□ -0.56
VRK3-217ENST00000599538 UTP20O75691 2785 aaKnown RBP11.55□□□□□ -0.56
VRK3-217ENST00000599538 SCO2A0A1W2PP80 73 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 PSMB11A5LHX3 300 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 C1orf196B1AJZ1 125 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 IGHV2-5P01817 119 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 EFNA4P52798 201 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 OR5T1Q8NG75 326 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 SLC25A33Q9BSK2 321 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 BPESC1Q9GZL8 116 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 DOK5Q9P104 306 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 SPG11Q96JI7 2443 aa11.55□□□□□ -0.56
VRK3-217ENST00000599538 TRBV20OR9-2A0A075B6H5 130 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 TRAV5A0A0B4J249 113 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 RND2P52198 227 aa11.54□□□□□ -0.56
VRK3-217ENST00000599538 SUB1P53999 127 aaKnown RBP eCLIP11.54□□□□□ -0.56
VRK3-217ENST00000599538 MMDQ15546 238 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms