RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 RND3P61587 244 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 PAFAH1B2P68402 229 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 LYG2Q86SG7 212 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 WFDC3Q8IUB2 231 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 ARRDC1Q8N5I2 433 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 OR10C1Q96KK4 312 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 RNF2Q99496 336 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 NXF2Q9GZY0 626 aaKnown RBP7.27□□□□□ -1.25
VRK3-216ENST00000599342 EXTL2Q9UBQ6 330 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 KLK11Q9UBX7 282 aa7.27□□□□□ -1.25
VRK3-216ENST00000599342 IGHV3-49A0A0A0MS15 119 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 C3orf85A0A1B0GTC6 90 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 CORTO00230 105 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 IGHV3-48P01763 117 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 CD5P06127 495 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 PI3P19957 117 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 TBPP20226 339 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 NPBWR1P48145 328 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 HOXA1P49639 335 aaPredicted RBP7.26□□□□□ -1.25
VRK3-216ENST00000599342 SUB1P53999 127 aaKnown RBP eCLIP7.26□□□□□ -1.25
VRK3-216ENST00000599342 CMC4P56277 68 aaPredicted RBP7.26□□□□□ -1.25
VRK3-216ENST00000599342 TNFRSF9Q07011 255 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 TRIM16LQ309B1 348 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 SPINK9Q5DT21 86 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 APRG1Q8IVJ8 170 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 TMEM217Q8N7C4 229 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 CCDC71LQ8N9Z2 235 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 DUSP18Q8NEJ0 188 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 OR52I2Q8NH67 350 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 RNASE11Q8TAA1 199 aaKnown RBP7.26□□□□□ -1.25
VRK3-216ENST00000599342 C15orf40Q8WUR7 153 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 ENY2Q9NPA8 101 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 COPZ2Q9P299 210 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 DNAH1Q9P2D7 4330 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 LYSTQ99698 3801 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 CSMD3Q7Z407 3707 aa7.26□□□□□ -1.25
VRK3-216ENST00000599342 IGHV3OR16-13A0A075B7E8 117 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 IGHV3-74A0A0B4J1X5 117 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 ST8SIA3O43173 380 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 SCGB2A1O75556 95 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 GABARAPO95166 117 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 CD3DP04234 171 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 ZNF182P17025 639 aaPredicted RBP7.25□□□□□ -1.25
VRK3-216ENST00000599342 TAS2R19P59542 299 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 IZUMO4Q1ZYL8 232 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 SCGB2B2Q4G0G5 96 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 ZNF600Q6ZNG1 722 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 TCF24Q7RTU0 167 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 LHFPL1Q86WI0 220 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 ZFAND1Q8TCF1 268 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 RNF183Q96D59 192 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 RRNAD1Q96FB5 475 aaKnown RBP7.25□□□□□ -1.25
VRK3-216ENST00000599342 TP53RKQ96S44 253 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 MAP6D1Q9H9H5 199 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 MTFP1Q9UDX5 166 aa7.25□□□□□ -1.25
VRK3-216ENST00000599342 MPTX1A8MV57 137 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 INS-IGF2F8WCM5 200 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 DNASE2O00115 360 aaPredicted RBP7.24□□□□□ -1.25
VRK3-216ENST00000599342 RGS5O15539 181 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 B3GALNT1O75752 331 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 RAB3DO95716 219 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 LY6G6CO95867 125 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 IGKV1-5P01602 117 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 ATF4P18848 351 aaPredicted RBP7.24□□□□□ -1.25
VRK3-216ENST00000599342 OPRK1P41145 380 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 RPL11P62913 178 aaKnown RBP7.24□□□□□ -1.25
VRK3-216ENST00000599342 CTF1Q16619 201 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 GBGT1Q8N5D6 347 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 TMEM229BQ8NBD8 167 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 TERB2Q8NHR7 220 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 LINC00476Q8WZB0 136 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 ZNF414Q96IQ9 312 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 NAA50Q9GZZ1 169 aaKnown RBP7.24□□□□□ -1.25
VRK3-216ENST00000599342 CSTL1Q9H114 145 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 TMEM231Q9H6L2 316 aa7.24□□□□□ -1.25
VRK3-216ENST00000599342 KLK5Q9Y337 293 aaPredicted RBP7.24□□□□□ -1.25
VRK3-216ENST00000599342 PUS1Q9Y606 427 aaKnown RBP eCLIP7.24□□□□□ -1.25
VRK3-216ENST00000599342 A0A0B4J293 547 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 IGHV3-66A0A0C4DH42 116 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 ETV6P41212 452 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 EWSR1Q01844 656 aaKnown RBP eCLIP7.23□□□□□ -1.25
VRK3-216ENST00000599342 ZNF124Q15973 351 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 SP6Q3SY56 376 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 GPR107Q5VW38 600 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 FAM90A2PQ658T7 463 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 STEAP1BQ6NZ63 245 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 CEMP1Q6PRD7 247 aaPredicted RBP7.23□□□□□ -1.25
VRK3-216ENST00000599342 TOMM20LQ6UXN7 152 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 OR4D10Q8NGI6 311 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 OR13C8Q8NGS7 320 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 GATAD1Q8WUU5 269 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 ST8SIA2Q92186 375 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 ABHD1Q96SE0 405 aa7.23□□□□□ -1.25
VRK3-216ENST00000599342 C14orf166Q9Y224 244 aaKnown RBP7.23□□□□□ -1.25
VRK3-216ENST00000599342 HYDINQ4G0P3 5121 aa7.22□□□□□ -1.25
VRK3-216ENST00000599342 A0A1W2PS18 150 aa7.22□□□□□ -1.25
VRK3-216ENST00000599342 GABARAPH6UMI1 98 aa7.22□□□□□ -1.25
VRK3-216ENST00000599342 DFFBO76075 338 aa7.22□□□□□ -1.25
VRK3-216ENST00000599342 TMEM50AO95807 157 aa7.22□□□□□ -1.25
VRK3-216ENST00000599342 CD74P04233 296 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms