RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 MCFD2Q8NI22 146 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 TRIM63Q969Q1 353 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 TMEM222Q9H0R3 208 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 NAA60Q9H7X0 242 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 RETNQ9HD89 108 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 MRPL36Q9P0J6 103 aaKnown RBP9.09□□□□□ -0.95
LIG1-217ENST00000599165 COPZ2Q9P299 210 aa9.09□□□□□ -0.95
LIG1-217ENST00000599165 CRYM-AS1A6NIL9 109 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 NDUFA4O00483 81 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 SCAF4O95104 1147 aaKnown RBP9.08□□□□□ -0.96
LIG1-217ENST00000599165 RNASE2P10153 161 aaKnown RBP9.08□□□□□ -0.96
LIG1-217ENST00000599165 ETV6P41212 452 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 AKR1C2P52895 323 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 ZNF79Q15937 498 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 BSXQ3C1V8 233 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 SPSB3Q6PJ21 355 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 SELENOHQ8IZQ5 122 aaKnown RBP9.08□□□□□ -0.96
LIG1-217ENST00000599165 OR1L6Q8NGR2 347 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 MARC2Q969Z3 335 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 MISP3Q96FF7 219 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 CITED4Q96RK1 184 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 PRR13Q9NZ81 148 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 MRPL27Q9P0M9 148 aaKnown RBP9.08□□□□□ -0.96
LIG1-217ENST00000599165 RABL2AQ9UBK7 228 aaPredicted RBP9.08□□□□□ -0.96
LIG1-217ENST00000599165 RABL2BQ9UNT1 228 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 UFC1Q9Y3C8 167 aa9.08□□□□□ -0.96
LIG1-217ENST00000599165 TEX13DA0A0J9YY54 714 aaPredicted RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 FABP12A6NFH5 140 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 OR11H12B2RN74 326 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 DISC1C4P0D8 188 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 CYB5BO43169 146 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 ZNF207O43670 478 aaKnown RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 SUPT4H1P63272 117 aaKnown RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 KLF9Q13886 244 aaPredicted RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 TRIM16LQ309B1 348 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 Q56UQ5 140 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 UBAC2Q8NBM4 344 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 GPR146Q96CH1 333 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 HIPK2Q9H2X6 1198 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 FNDC4Q9H6D8 234 aaPredicted RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 PALMDQ9NP74 551 aa9.07□□□□□ -0.96
LIG1-217ENST00000599165 DAZ1Q9NQZ3 744 aaKnown RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 RSL24D1Q9UHA3 163 aaKnown RBP9.07□□□□□ -0.96
LIG1-217ENST00000599165 TRAV25A0A0B4J276 109 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 K7EMT4 169 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 B3GALNT1O75752 331 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 TMEM187Q14656 261 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 MLANAQ16655 118 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 MUC7Q8TAX7 377 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 TMEM170AQ8WVE7 144 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 RBPMSQ93062 196 aaKnown RBP9.06□□□□□ -0.96
LIG1-217ENST00000599165 OR10C1Q96KK4 312 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 PRRT1Q99946 306 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 SPATA25Q9BR10 227 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 TUBA4BQ9H853 241 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 ZMAT4Q9H898 229 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 SRD5A3Q9H8P0 318 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 C14orf166Q9Y224 244 aaKnown RBP9.06□□□□□ -0.96
LIG1-217ENST00000599165 TMEM56-RWDD3S4R434 201 aa9.06□□□□□ -0.96
LIG1-217ENST00000599165 TENM2Q9NT68 2774 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 NOL3O60936 208 aaKnown RBP9.05□□□□□ -0.96
LIG1-217ENST00000599165 IFNA17P01571 189 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 MFAP4P55083 255 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 ERHP84090 104 aaKnown RBP9.05□□□□□ -0.96
LIG1-217ENST00000599165 TMEM268Q5VZI3 342 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 CCDC190Q86UF4 302 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 SLC35G3Q8N808 338 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 PINX1Q96BK5 328 aaKnown RBP9.05□□□□□ -0.96
LIG1-217ENST00000599165 GALNT14Q96FL9 552 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 TXN2Q99757 166 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 C20orf24Q9BUV8 137 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 CACNG5Q9UF02 275 aa9.05□□□□□ -0.96
LIG1-217ENST00000599165 C15orf62A8K5M9 175 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 C3orf84H3BNL1 204 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 TSPAN4O14817 238 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 ATG12O94817 140 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 DHODHQ02127 395 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 ODF3L2Q3SX64 289 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 NMSQ5H8A3 153 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 CASC10Q5T4H9 136 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 FAM90A2PQ658T7 463 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 FAM219AQ8IW50 185 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 OR52B4Q8NGK2 314 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 OR52E5Q8NH55 327 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 RRNAD1Q96FB5 475 aaKnown RBP9.04□□□□□ -0.96
LIG1-217ENST00000599165 RNF2Q99496 336 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 FAM110AQ9BQ89 295 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 ZFAND3Q9H8U3 227 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 SMPXQ9UHP9 88 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 DNAH1Q9P2D7 4330 aa9.04□□□□□ -0.96
LIG1-217ENST00000599165 IGHV3-49A0A0A0MS15 119 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 IGHV7-4-1A0A0J9YVY3 117 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 A0A1B0GU03 582 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 CHEK1O14757 476 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 NUPL2O15504 423 aaKnown RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 TMEM50AO95807 157 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 APOHP02749 345 aaPredicted RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 HOXA1P49639 335 aaPredicted RBP9.03□□□□□ -0.96
LIG1-217ENST00000599165 SPCS3P61009 180 aa9.03□□□□□ -0.96
LIG1-217ENST00000599165 TOMM20LQ6UXN7 152 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms