RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 OR5T1Q8NG75 326 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 ABHD5Q8WTS1 349 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 BSCL2Q96G97 398 aaPredicted RBP7.37□□□□□ -1.23
TRIM28-208ENST00000597172 CIB3Q96Q77 187 aaPredicted RBP7.37□□□□□ -1.23
TRIM28-208ENST00000597172 P2RX4Q99571 388 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 WNT10AQ9GZT5 417 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 HIPK2Q9H2X6 1198 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 ENY2Q9NPA8 101 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 SERTAD4Q9NUC0 356 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 RNF114Q9Y508 228 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 U3KQ87 197 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 FXYD6-FXYD2A0A087WZ82 144 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TRAV41A0A0B4J266 112 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 IGSF23A1L1A6 192 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 NPIPB5A8MRT5 1133 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 HMSDA8MTL9 139 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 H3BP45 60 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 L7N2F9 121 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 AP4M1O00189 453 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 SOX15O60248 233 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TSC22D2O75157 780 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 FBXO24O75426 580 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 LY86O95711 162 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 PET100P0DJ07 73 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 PVALBP20472 110 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 PPIFP30405 207 aaKnown RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 HTR2BP41595 481 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 RPL15P61313 204 aaKnown RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 RPL23AP62750 156 aaKnown RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 VAMP2P63027 116 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 CFHR3Q02985 330 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 CD69Q07108 199 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 ARL16Q0P5N6 197 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM267Q0VDI3 215 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 ECSCRQ19T08 205 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 KLK9Q2XQG4 91 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 C2orf83Q53S99 150 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 DEFB121Q5J5C9 76 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM14EPQ6UXP3 125 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 HSD17B13Q7Z5P4 300 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 ZNF546Q86UE3 836 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 HAPLN4Q86UW8 402 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 STPG2Q8N412 459 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM252Q8N6L7 170 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 ZNF114Q8NC26 417 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 DCUN1D4Q92564 292 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM68Q96MH6 324 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 FANCD2OSQ96PS1 177 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 C16orf95Q9H693 158 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 LYRM2Q9NU23 88 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 ZNF580Q9UK33 172 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 KLK9Q9UKQ9 250 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 TNFSF18Q9UNG2 199 aa7.36□□□□□ -1.23
TRIM28-208ENST00000597172 F11RQ9Y624 299 aaKnown RBP7.36□□□□□ -1.23
TRIM28-208ENST00000597172 RNF222A6NCQ9 220 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 PRSS46E5RG02 174 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 IFNA10P01566 189 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 PRH1P02810 166 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 RPL12P30050 165 aaKnown RBP7.35□□□□□ -1.23
TRIM28-208ENST00000597172 SNCAP37840 140 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 NHLH2Q02577 135 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 MLANAQ16655 118 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 LGALSLQ3ZCW2 172 aaPredicted RBP7.35□□□□□ -1.23
TRIM28-208ENST00000597172 CASC10Q5T4H9 136 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 C10orf99Q6UWK7 81 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 NOXA1Q86UR1 476 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 SLC24A4Q8NFF2 622 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 OR1P1Q8NH06 330 aa7.35□□□□□ -1.23
TRIM28-208ENST00000597172 STRAPQ9Y3F4 350 aaKnown RBP7.35□□□□□ -1.23
TRIM28-208ENST00000597172 IGLV11-55A0A075B6I3 123 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 RBMY1BA6NDE4 496 aaKnown RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 RBMY1EA6NEQ0 496 aaKnown RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 BOLA2-SMG1P6H3BVE0 249 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 K7EIL1 84 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 CST7O76096 145 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 IGLV1-40P01703 118 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 RBMY1DP0C7P1 496 aaKnown RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 METTL15P1P0C7V9 234 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 CXCL2P19875 107 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 NPY1RP25929 384 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 CAV2P51636 162 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 NKX2-5P52952 324 aaPredicted RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 SUB1P53999 127 aaKnown RBP eCLIP7.34□□□□□ -1.231e-6■□□□□ 9.3
TRIM28-208ENST00000597172 ATP5IP56385 69 aaPredicted RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 RPP30P78346 268 aaKnown RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 EWSR1Q01844 656 aaKnown RBP eCLIP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 ZFP69Q49AA0 526 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 LAMTOR1Q6IAA8 161 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 SLC25A24Q6NUK1 477 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 ZNF329Q86UD4 541 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 MRPL41Q8IXM3 137 aaKnown RBP7.34□□□□□ -1.23
TRIM28-208ENST00000597172 LINC01006Q8NI28 216 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 HYLS1Q96M11 299 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 AQP10Q96PS8 301 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 KLK15Q9H2R5 256 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 CSMD3Q7Z407 3707 aa7.34□□□□□ -1.23
TRIM28-208ENST00000597172 TRBV9A0A0B4J1U6 114 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 ARPC5O15511 151 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 NDUFB8O95169 186 aa7.33□□□□□ -1.24
TRIM28-208ENST00000597172 BRI3O95415 125 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms