RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 RBMS3Q6XE24 437 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 Q6ZS46 218 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 UBAC2Q8NBM4 344 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 FAM110DQ8TAY7 271 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 RNASEH2CQ8TDP1 164 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 TMEM147Q9BVK8 224 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 ZNF471Q9BX82 626 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 PARD6GQ9BYG4 376 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 WNT10AQ9GZT5 417 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 ESM1Q9NQ30 184 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 TNFRSF19Q9NS68 423 aa11.59□□□□□ -0.55
SHKBP1-211ENST00000595945 FNDC10F2Z333 226 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 JTBO76095 146 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 MDKP21741 143 aaPredicted RBP11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 CD69Q07108 199 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 C9orf152Q5JTZ5 239 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 UNQ5815/PRO19632Q6UWF5 114 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 SLC35E3Q7Z769 313 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 LILRB2Q8N423 598 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 OR1L6Q8NGR2 347 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 ST8SIA2Q92186 375 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 SLA2Q9H6Q3 261 aa11.58□□□□□ -0.56
SHKBP1-211ENST00000595945 SETD2Q9BYW2 2564 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 IGLV11-55A0A075B6I3 123 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 BORCS7-ASMTA0A0B4J1R7 106 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 INAFM1C9JVW0 142 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 CFDP00746 253 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 GPX4P36969 197 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 ZNF266Q14584 549 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 ECSCRQ19T08 205 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 ARSJQ5FYB0 599 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 BAP18Q8IXM2 172 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 Q8N2B8 174 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 CACNG8Q8WXS5 425 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 FANCD2OSQ96PS1 177 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 GINS3Q9BRX5 216 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 FNDC4Q9H6D8 234 aaPredicted RBP11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 ZNF702PQ9H963 129 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 UQCC1Q9NVA1 299 aa11.57□□□□□ -0.56
SHKBP1-211ENST00000595945 TRAV41A0A0B4J266 112 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 G3V318 75 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 AP4M1O00189 453 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 CORTO00230 105 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 TPT1P13693 172 aaKnown RBP11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 HILS1P60008 231 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 EIF5AP63241 154 aaKnown RBP11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 Q71RC1 249 aaPredicted RBP11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 SLC16A13Q7RTY0 426 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 OR5T1Q8NG75 326 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 DUX5Q96PT3 197 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 PRSS22Q9GZN4 317 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 NPFFR1Q9GZQ6 430 aa11.56□□□□□ -0.56
SHKBP1-211ENST00000595945 C2CD3Q4AC94 2353 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 ZFHX3Q15911 3703 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 I3L2K1 104 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 SOX15O60248 233 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 PPIFP30405 207 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 CFHR3Q02985 330 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 EXOSC2Q13868 293 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 MLANAQ16655 118 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 SLC25A24Q6NUK1 477 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 TEX261Q6UWH6 196 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 TREML4Q6UXN2 200 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 ZNF418Q8TF45 676 aaPredicted RBP11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 WDR61Q9GZS3 305 aaKnown RBP11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 WDR83OSQ9Y284 106 aa11.55□□□□□ -0.56
SHKBP1-211ENST00000595945 TRBV9A0A0B4J1U6 114 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 UBE2L5PA0A1B0GUS4 154 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 K7EIM0 57 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 RGS13O14921 159 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 CRLF1O75462 422 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 TSPAN9O75954 239 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 BRI3O95415 125 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 IFNA5P01569 189 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 PRH1P02810 166 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 RNASE1P07998 156 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 FAM157CP0CG43 387 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 HIST1H1BP16401 226 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 GAMTQ14353 236 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 ETFRF1Q6IPR1 90 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 ZNF680Q8NEM1 530 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 PHYHIPLQ96FC7 376 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 MISP3Q96FF7 219 aa11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 NOL4LQ96MY1 436 aaPredicted RBP11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 MRPL36Q9P0J6 103 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 LSM4Q9Y4Z0 139 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-211ENST00000595945 RPS10-NUDT3A0A1W2PQS6 291 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 TRIM77I1YAP6 450 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 MT-CO2P00403 227 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 DEFA4P12838 97 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 RPL15P61313 204 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 TMEM95Q3KNT9 176 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 TMEM144Q7Z5S9 345 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 HSD17B11Q8NBQ5 300 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 OR2T6Q8NHC8 308 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 TAF15Q92804 592 aaKnown RBP eCLIP11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 NPVFQ9HCQ7 196 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 LINC00527Q9UJ94 153 aa11.53□□□□□ -0.56
SHKBP1-211ENST00000595945 H3BUA1 57 aa11.52□□□□□ -0.57
SHKBP1-211ENST00000595945 SEC11BP0C7V7 166 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms