RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ADMP35318 185 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 ELLP55199 621 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-205ENST00000595028 ERHP84090 104 aaKnown RBP11.39□□□□□ -0.59
TRIM28-205ENST00000595028 DHODHQ02127 395 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 KLF9Q13886 244 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-205ENST00000595028 ZNF79Q15937 498 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 TM4SF20Q53R12 229 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 PYDC2Q56P42 97 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 Q56UQ5 140 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 FAM219AQ8IW50 185 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 UBAC2Q8NBM4 344 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 RBPMSQ93062 196 aaKnown RBP11.39□□□□□ -0.59
TRIM28-205ENST00000595028 MARC2Q969Z3 335 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 MISP3Q96FF7 219 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 CHRDL1Q9BU40 450 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 PDCD10Q9BUL8 212 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 GAR1Q9NY12 217 aaKnown RBP11.39□□□□□ -0.59
TRIM28-205ENST00000595028 MLXQ9UH92 298 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 UFC1Q9Y3C8 167 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 ZNF785A8K8V0 405 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 MT-CO2P00403 227 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 IFNA17P01571 189 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 FCGR2BP31994 310 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-205ENST00000595028 HOXA1P49639 335 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-205ENST00000595028 CD81P60033 236 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 GUCA2BQ16661 112 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 AARDQ4LEZ3 155 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 ZNF57Q68EA5 555 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-205ENST00000595028 BTNL8Q6UX41 500 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 CCDC190Q86UF4 302 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 TMEM61Q8N0U2 210 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 TMEM230Q96A57 120 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 WDR89Q96FK6 387 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-205ENST00000595028 SCGB3A2Q96PL1 93 aa11.38□□□□□ -0.59
TRIM28-205ENST00000595028 CSMD3Q7Z407 3707 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 NDUFA4O00483 81 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 C8orf88P0DMB2 117 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 FAUP35544 74 aaKnown RBP11.37□□□□□ -0.59
TRIM28-205ENST00000595028 AP3S2P59780 193 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 TMEM268Q5VZI3 342 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 Q6ZRM9 215 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 SELENOHQ8IZQ5 122 aaKnown RBP11.37□□□□□ -0.59
TRIM28-205ENST00000595028 GALNT14Q96FL9 552 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 RCHY1Q96PM5 261 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 DAZ1Q9NQZ3 744 aaKnown RBP11.37□□□□□ -0.59
TRIM28-205ENST00000595028 MRPL27Q9P0M9 148 aaKnown RBP11.37□□□□□ -0.59
TRIM28-205ENST00000595028 SELENOKQ9Y6D0 94 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 TMEM56-RWDD3S4R434 201 aa11.37□□□□□ -0.59
TRIM28-205ENST00000595028 CTSGP08311 255 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 RNASE2P10153 161 aaKnown RBP11.36□□□□□ -0.59
TRIM28-205ENST00000595028 SNCAP37840 140 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 ETV6P41212 452 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 MFAP4P55083 255 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 CASC10Q5T4H9 136 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 PVRIGQ6DKI7 326 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 TOMM5Q8N4H5 51 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 IL22RA2Q969J5 263 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 PINX1Q96BK5 328 aaKnown RBP11.36□□□□□ -0.59
TRIM28-205ENST00000595028 ZNF414Q96IQ9 312 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 TXN2Q99757 166 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 NEURL2Q9BR09 285 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 TM2D3Q9BRN9 247 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 CACNG5Q9UF02 275 aa11.36□□□□□ -0.59
TRIM28-205ENST00000595028 NUPL2O15504 423 aaKnown RBP11.35□□□□□ -0.59
TRIM28-205ENST00000595028 CD7P09564 240 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 RELQ04864 619 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-205ENST00000595028 TMEM187Q14656 261 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 OR52E5Q8NH55 327 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 DEDD2Q8WXF8 326 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 C20orf24Q9BUV8 137 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 ZMAT4Q9H898 229 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 ENY2Q9NPA8 101 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-205ENST00000595028 KCNIP3Q9Y2W7 256 aa11.35□□□□□ -0.59
TRIM28-205ENST00000595028 TRAV25A0A0B4J276 109 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 CORTO00230 105 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 IGHV3-48P01763 117 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 SPCS3P61009 180 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 SUPT4H1P63272 117 aaKnown RBP11.34□□□□□ -0.59
TRIM28-205ENST00000595028 BSXQ3C1V8 233 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 SPANXN2Q5MJ10 180 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 GPR146Q96CH1 333 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 SRRQ9GZT4 340 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 WFDC10AQ9H1F0 79 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 TUBA4BQ9H853 241 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 PRR13Q9NZ81 148 aa11.34□□□□□ -0.59
TRIM28-205ENST00000595028 IGHV3OR16-8A0A075B7F1 116 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 LCE6AA0A183 80 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 GNG7O60262 68 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 SCAF4O95104 1147 aaKnown RBP11.33□□□□□ -0.6
TRIM28-205ENST00000595028 AKR1C4P17516 323 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 SUB1P53999 127 aaKnown RBP eCLIP11.33□□□□□ -0.69e-9■□□□□ 10.3
TRIM28-205ENST00000595028 SRPXP78539 464 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 HAGHQ16775 308 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 SLC16A13Q7RTY0 426 aa11.33□□□□□ -0.6
TRIM28-205ENST00000595028 STARD9Q9P2P6 4700 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 A0A0B4J2A0 478 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 C15orf62A8K5M9 175 aa11.32□□□□□ -0.6
TRIM28-205ENST00000595028 K7EMT4 169 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms