RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 SEC22AQ96IW7 307 aa11.95□□□□□ -0.5
LIG1-205ENST00000593425 CMTM3Q96MX0 182 aa11.95□□□□□ -0.5
LIG1-205ENST00000593425 TXN2Q99757 166 aa11.95□□□□□ -0.5
LIG1-205ENST00000593425 YTHDF1Q9BYJ9 559 aaKnown RBP11.95□□□□□ -0.5
LIG1-205ENST00000593425 DNAH6Q9C0G6 4158 aa11.95□□□□□ -0.5
LIG1-205ENST00000593425 GNG7O60262 68 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 TMEM127O75204 238 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 HLA-DMAP28067 261 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 PRCDQ00LT1 54 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 LEMD1Q68G75 181 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 TOMM20LQ6UXN7 152 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 TBC1D26Q86UD7 250 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 LYSMD2Q8IV50 215 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 FAM24BQ8N5W8 94 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 VSIRQ9H7M9 311 aa11.94□□□□□ -0.5
LIG1-205ENST00000593425 HECTD4Q9Y4D8 3996 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 IGHV3-66A0A0C4DH42 116 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 IFNA4P05014 189 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 DEFB131AP59861 70 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 H2BFWTQ7Z2G1 175 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 SAMD12Q8N8I0 201 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 OR4A16Q8NH70 328 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 C2CD4CQ8TF44 421 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 MRGPRFQ96AM1 343 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 GINS3Q9BRX5 216 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 MS4A6AQ9H2W1 248 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 Q9H521 79 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 ZFAND3Q9H8U3 227 aa11.93□□□□□ -0.5
LIG1-205ENST00000593425 FAM212BQ9NTI7 297 aaPredicted RBP11.93□□□□□ -0.5
LIG1-205ENST00000593425 ST8SIA3O43173 380 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 DFFBO76075 338 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 ATP6V1G2O95670 118 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 EIF4EP06730 217 aaKnown RBP11.92□□□□□ -0.5
LIG1-205ENST00000593425 PRSS3P35030 304 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 RPS19P39019 145 aaKnown RBP11.92□□□□□ -0.5
LIG1-205ENST00000593425 PAFAH1B2P68402 229 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 TMEM187Q14656 261 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 SPINK9Q5DT21 86 aa11.92□□□□□ -0.5
LIG1-205ENST00000593425 KIAA1109Q2LD37 5005 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 HSPE1P61604 102 aaKnown RBP11.91□□□□□ -0.5
LIG1-205ENST00000593425 IZUMO4Q1ZYL8 232 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 CROCCP3Q8IVE0 287 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 Q8NAQ8 132 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 GPX8Q8TED1 209 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 APLNQ9ULZ1 77 aa11.91□□□□□ -0.5
LIG1-205ENST00000593425 PUS1Q9Y606 427 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIG1-205ENST00000593425 A0A1B0GU03 582 aa11.9□□□□□ -0.5
LIG1-205ENST00000593425 DNASE2O00115 360 aaPredicted RBP11.9□□□□□ -0.5
LIG1-205ENST00000593425 TSPAN5P62079 268 aa11.9□□□□□ -0.5
LIG1-205ENST00000593425 ERHP84090 104 aaKnown RBP11.9□□□□□ -0.5
LIG1-205ENST00000593425 ZNF600Q6ZNG1 722 aa11.9□□□□□ -0.5
LIG1-205ENST00000593425 TRAV2A0A0B4J234 112 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 IGLL5B9A064 214 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 CD5P06127 495 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 GIG44P09565 113 aaPredicted RBP11.89□□□□□ -0.51
LIG1-205ENST00000593425 S100GP29377 79 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 TCTAP57738 103 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 LSM3P62310 102 aaKnown RBP11.89□□□□□ -0.51
LIG1-205ENST00000593425 RPL11P62913 178 aaKnown RBP11.89□□□□□ -0.51
LIG1-205ENST00000593425 LPCAT3Q6P1A2 487 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 DUSP18Q8NEJ0 188 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 MRPL36Q9P0J6 103 aaKnown RBP11.89□□□□□ -0.51
LIG1-205ENST00000593425 PCLOQ9Y6V0 5065 aa11.89□□□□□ -0.51
LIG1-205ENST00000593425 IGHV4-28A0A0C4DH34 117 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 TMEM50AO95807 157 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 RBMY1A1P0DJD3 496 aaKnown RBP11.88□□□□□ -0.51
LIG1-205ENST00000593425 RBMY1CP0DJD4 496 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 NPBWR1P48145 328 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 UCP3P55916 312 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 RBMY1FQ15415 496 aaKnown RBP11.88□□□□□ -0.51
LIG1-205ENST00000593425 STHQ8IWL8 128 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 RABAC1Q9UI14 185 aa11.88□□□□□ -0.51
LIG1-205ENST00000593425 AGRNO00468 2067 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 IGKV1-5P01602 117 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 C4BPBP20851 252 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 KCTD21Q4G0X4 260 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 PVRIGQ6DKI7 326 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 TRPT1Q86TN4 253 aaKnown RBP11.87□□□□□ -0.51
LIG1-205ENST00000593425 SNX29P2Q8IUI4 249 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 YIPF6Q96EC8 236 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 HRH4Q9H3N8 390 aa11.87□□□□□ -0.51
LIG1-205ENST00000593425 C11orf94C9JXX5 98 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 K7EQG2 157 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 P0C879 139 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 RNASE2P10153 161 aaKnown RBP11.86□□□□□ -0.51
LIG1-205ENST00000593425 SLC35G3Q8N808 338 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 STXBP6Q8NFX7 210 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 FNDC4Q9H6D8 234 aaPredicted RBP11.86□□□□□ -0.51
LIG1-205ENST00000593425 TMEM231Q9H6L2 316 aa11.86□□□□□ -0.51
LIG1-205ENST00000593425 A0A0B4J293 547 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 KNCNA6PVL3 124 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 INS-IGF2F8WCM5 200 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 M0QYG6 137 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 PI3P19957 117 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 HLA-DMBP28068 263 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 RCVRNP35243 200 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 SNCAP37840 140 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 PPP5CP53041 499 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 Q6ZTC4 211 aa11.85□□□□□ -0.51
LIG1-205ENST00000593425 TP53RKQ96S44 253 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms