RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 C20orf24Q9BUV8 137 aa21.11■□□□□ 0.97
LIG3-208ENST00000586407 TMEM222Q9H0R3 208 aa21.11■□□□□ 0.97
LIG3-208ENST00000586407 GPR132Q9UNW8 380 aa21.11■□□□□ 0.97
LIG3-208ENST00000586407 IFNA17P01571 189 aa21.1■□□□□ 0.97
LIG3-208ENST00000586407 C8orf88P0DMB2 117 aa21.1■□□□□ 0.97
LIG3-208ENST00000586407 GLYATL2Q8WU03 294 aa21.1■□□□□ 0.97
LIG3-208ENST00000586407 PRR13Q9NZ81 148 aa21.1■□□□□ 0.97
LIG3-208ENST00000586407 ATG12O94817 140 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 CTSGP08311 255 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 ERHP84090 104 aaKnown RBP21.09■□□□□ 0.97
LIG3-208ENST00000586407 SURF2Q15527 256 aaPredicted RBP21.09■□□□□ 0.97
LIG3-208ENST00000586407 SPSB3Q6PJ21 355 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 RRNAD1Q96FB5 475 aaKnown RBP21.09■□□□□ 0.97
LIG3-208ENST00000586407 PRRT1Q99946 306 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 RETNQ9HD89 108 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 MCUBQ9NWR8 336 aa21.09■□□□□ 0.97
LIG3-208ENST00000586407 MRPL27Q9P0M9 148 aaKnown RBP21.09■□□□□ 0.97
LIG3-208ENST00000586407 ELLP55199 621 aaPredicted RBP21.08■□□□□ 0.97
LIG3-208ENST00000586407 MARC2Q969Z3 335 aa21.08■□□□□ 0.97
LIG3-208ENST00000586407 SRD5A3Q9H8P0 318 aa21.08■□□□□ 0.97
LIG3-208ENST00000586407 CRYM-AS1A6NIL9 109 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 OR11H12B2RN74 326 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 NDUFA4O00483 81 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 CDS2O95674 445 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 HOXA1P49639 335 aaPredicted RBP21.07■□□□□ 0.96
LIG3-208ENST00000586407 SELENOHQ8IZQ5 122 aaKnown RBP21.07■□□□□ 0.96
LIG3-208ENST00000586407 TMEM230Q96A57 120 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 PDCD10Q9BUL8 212 aa21.07■□□□□ 0.96
LIG3-208ENST00000586407 RBM38Q9H0Z9 239 aaKnown RBP21.07■□□□□ 0.96
LIG3-208ENST00000586407 RBMY1BA6NDE4 496 aaKnown RBP21.06■□□□□ 0.96
LIG3-208ENST00000586407 RBMY1EA6NEQ0 496 aaKnown RBP21.06■□□□□ 0.96
LIG3-208ENST00000586407 RBMY1DP0C7P1 496 aaKnown RBP21.06■□□□□ 0.96
LIG3-208ENST00000586407 MFAP4P55083 255 aa21.06■□□□□ 0.96
LIG3-208ENST00000586407 TMEM268Q5VZI3 342 aa21.06■□□□□ 0.96
LIG3-208ENST00000586407 OR52B4Q8NGK2 314 aa21.06■□□□□ 0.96
LIG3-208ENST00000586407 ATP6V0BQ99437 205 aa21.06■□□□□ 0.96
LIG3-208ENST00000586407 DAZ1Q9NQZ3 744 aaKnown RBP21.06■□□□□ 0.96
LIG3-208ENST00000586407 V9GYH0 126 aa21.06■□□□□ 0.96
LIG3-208ENST00000586407 B3GALNT1O75752 331 aa21.05■□□□□ 0.96
LIG3-208ENST00000586407 RNASE2P10153 161 aaKnown RBP21.05■□□□□ 0.96
LIG3-208ENST00000586407 SNCAP37840 140 aa21.05■□□□□ 0.96
LIG3-208ENST00000586407 LINC00322Q6ZN03 302 aaPredicted RBP21.05■□□□□ 0.96
LIG3-208ENST00000586407 RBPMSQ93062 196 aaKnown RBP21.05■□□□□ 0.96
LIG3-208ENST00000586407 IGHV3-49A0A0A0MS15 119 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 NUPL2O15504 423 aaKnown RBP21.04■□□□□ 0.96
LIG3-208ENST00000586407 PYDC2Q56P42 97 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 RBPMS2Q6ZRY4 209 aaKnown RBP21.04■□□□□ 0.96
LIG3-208ENST00000586407 TRIM63Q969Q1 353 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 GPR146Q96CH1 333 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 SPATA25Q9BR10 227 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 CACNG5Q9UF02 275 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 SCP2D1Q9UJQ7 156 aa21.04■□□□□ 0.96
LIG3-208ENST00000586407 NXPH3O95157 252 aa21.03■□□□□ 0.96
LIG3-208ENST00000586407 DHODHQ02127 395 aa21.03■□□□□ 0.96
LIG3-208ENST00000586407 SLC16A13Q7RTY0 426 aa21.03■□□□□ 0.96
LIG3-208ENST00000586407 GNG7O60262 68 aa21.02■□□□□ 0.96
LIG3-208ENST00000586407 YIF1AO95070 293 aa21.02■□□□□ 0.96
LIG3-208ENST00000586407 FCGR2BP31994 310 aaPredicted RBP21.02■□□□□ 0.96
LIG3-208ENST00000586407 KLF9Q13886 244 aaPredicted RBP21.02■□□□□ 0.96
LIG3-208ENST00000586407 ZNF79Q15937 498 aa21.02■□□□□ 0.96
LIG3-208ENST00000586407 FAM110AQ9BQ89 295 aa21.02■□□□□ 0.96
LIG3-208ENST00000586407 ENY2Q9NPA8 101 aa21.02■□□□□ 0.96
LIG3-208ENST00000586407 TRAV25A0A0B4J276 109 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 INS-IGF2F8WCM5 200 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 AKR1C4P17516 323 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 TMEM187Q14656 261 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 MUC7Q8TAX7 377 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 TXN2Q99757 166 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 GAR1Q9NY12 217 aaKnown RBP21.01■□□□□ 0.95
LIG3-208ENST00000586407 MRPL36Q9P0J6 103 aaKnown RBP21.01■□□□□ 0.95
LIG3-208ENST00000586407 NBEAL2Q6ZNJ1 2754 aa21.01■□□□□ 0.95
LIG3-208ENST00000586407 MLANAQ16655 118 aa21■□□□□ 0.95
LIG3-208ENST00000586407 FAM219AQ8IW50 185 aa21■□□□□ 0.95
LIG3-208ENST00000586407 CITED4Q96RK1 184 aa21■□□□□ 0.95
LIG3-208ENST00000586407 CTNNBIP1Q9NSA3 81 aaPredicted RBP21■□□□□ 0.95
LIG3-208ENST00000586407 UBQLN2Q9UHD9 624 aa21■□□□□ 0.95
LIG3-208ENST00000586407 IGHV3OR16-13A0A075B7E8 117 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 IGHV3-74A0A0B4J1X5 117 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 K7EMT4 169 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 SPCS3P61009 180 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 RELQ04864 619 aaPredicted RBP20.99■□□□□ 0.95
LIG3-208ENST00000586407 PVRIGQ6DKI7 326 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 HIPK2Q9H2X6 1198 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 FNDC4Q9H6D8 234 aaPredicted RBP20.99■□□□□ 0.95
LIG3-208ENST00000586407 TMEM56-RWDD3S4R434 201 aa20.99■□□□□ 0.95
LIG3-208ENST00000586407 C15orf62A8K5M9 175 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 S100A5P33763 92 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 SUPT4H1P63272 117 aaKnown RBP20.98■□□□□ 0.95
LIG3-208ENST00000586407 AARDQ4LEZ3 155 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 CCDC190Q86UF4 302 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 DUSP18Q8NEJ0 188 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 SMPXQ9UHP9 88 aa20.98■□□□□ 0.95
LIG3-208ENST00000586407 IGHV7-4-1A0A0J9YVY3 117 aa20.97■□□□□ 0.95
LIG3-208ENST00000586407 C3orf84H3BNL1 204 aa20.97■□□□□ 0.95
LIG3-208ENST00000586407 ANKRD55Q3KP44 614 aa20.97■□□□□ 0.95
LIG3-208ENST00000586407 GALNT14Q96FL9 552 aa20.97■□□□□ 0.95
LIG3-208ENST00000586407 EDA2RQ9HAV5 297 aa20.97■□□□□ 0.95
LIG3-208ENST00000586407 TSPAN4O14817 238 aa20.96■□□□□ 0.95
LIG3-208ENST00000586407 NPBWR1P48145 328 aa20.96■□□□□ 0.95
LIG3-208ENST00000586407 SUB1P53999 127 aaKnown RBP eCLIP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms