RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	KLK2	P20151	261 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	PPP1CC	P36873	323 aa	Known RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	GALR1	P47211	349 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	NCBP2	P52298	156 aa	Known RBP eCLIP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	PIGP	P57054	158 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TAS2R30	P59541	319 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	LCN6	P62502	163 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM267	Q0VDI3	215 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	IL15RA	Q13261	267 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	CCL15	Q16663	113 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	COX19	Q49B96	90 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TRMT12	Q53H54	448 aa	Known RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM128	Q5BJH2	165 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	AMMECR1L	Q6DCA0	310 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	NEGR1	Q7Z3B1	354 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	FAM19A1	Q7Z5A9	133 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM25	Q86YD3	366 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	SGPP2	Q8IWX5	399 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF440	Q8IYI8	595 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	CEND1	Q8N111	149 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	CYB561D1	Q8N8Q1	229 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	C5orf17	Q8NAS9	161 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	OR4D11	Q8NGI4	311 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF563	Q8TA94	476 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	FAM213B	Q8TBF2	198 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	STARD4	Q96DR4	205 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	ZMYND19	Q96E35	227 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	ADTRP	Q96IZ2	230 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	SLC35G5	Q96KT7	338 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	SMIM14	Q96QK8	99 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TBX5	Q99593	518 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	PSMG3	Q9BT73	122 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	EBPL	Q9BY08	206 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	BANF2	Q9H503	90 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	NYNRIN	Q9P2P1	1898 aa	Known RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	HCFC1	P51610	2035 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	SHROOM3	Q8TF72	1996 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	CASP8AP2	Q9UKL3	1982 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	TMEM131	Q92545	1883 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595		A0A087WUU8	490 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595		A0A0J9YWU9	116 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595		A6NDN8	102 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	3.56	□□□□□ -1.84
SS18-223	ENST00000583595	PDE6D	O43924	150 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	NPIPB7	O75200	414 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	DEDD	O75618	318 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	GPR75	O95800	540 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	REG1A	P05451	166 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	SERPINA7	P05543	415 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	IGHV3-43D	P0DP04	118 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	CSRP1	P21291	193 aa	Known RBP	3.56	□□□□□ -1.84
SS18-223	ENST00000583595	MDK	P21741	143 aa	Predicted RBP	3.56	□□□□□ -1.84
SS18-223	ENST00000583595	F2R	P25116	425 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	MYCNOS	P40205	109 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	TAS2R41	P59536	307 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	CACNG7	P62955	275 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	AES	Q08117	197 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	ADIG	Q0VDE8	80 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	PDGFRL	Q15198	375 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	MSMO1	Q15800	293 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	PMCHL1	Q16048	86 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	LTC4S	Q16873	150 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595		Q1RN00	199 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	MRGPRG-AS1	Q2M3A8	158 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	MPV17L	Q2QL34	196 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	SPIN3	Q5JUX0	258 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	CLEC12A	Q5QGZ9	265 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF880	Q6PDB4	577 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF584	Q8IVC4	421 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	DEFB125	Q8N687	156 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	OR2Z1	Q8NG97	314 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	OR2T10	Q8NGZ9	312 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	RNF133	Q8WVZ7	376 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	RNF185	Q96GF1	192 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	HSPB9	Q9BQS6	159 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	RSG1	Q9BU20	258 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	PAXX	Q9BUH6	204 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	NUDT9	Q9BW91	350 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	DEFB126	Q9BYW3	111 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	LINC00470	Q9BZP3	86 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	LPAR5	Q9H1C0	372 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	CXCL16	Q9H2A7	254 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	LINC00597	Q9H2U6	94 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	SLC7A10	Q9NS82	523 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	JPT1	Q9UK76	154 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	KLF12	Q9Y4X4	402 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	HEBP2	Q9Y5Z4	205 aa		3.56	□□□□□ -1.84
SS18-223	ENST00000583595	TRAV1-1	A0A0B4J248	108 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	IGSF23	A1L1A6	192 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	MEIS3P1	A6NDR6	274 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	CEACAM18	A8MTB9	384 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	KRTAP16-1	A8MUX0	517 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595		J3QR89	54 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595		M0R1X1	148 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	SLC17A3	O00476	420 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	CDS2	O95674	445 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	IFNA1	P01562	189 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	IFNA5	P01569	189 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	MAS1	P04201	325 aa		3.55	□□□□□ -1.84
SS18-223	ENST00000583595	GIG44	P09565	113 aa	Predicted RBP	3.55	□□□□□ -1.84

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