RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 OPRK1P41145 380 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 PPT1P50897 306 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 TREML4Q6UXN2 200 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 LHFPL4Q7Z7J7 247 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 CENPVQ7Z7K6 275 aaPredicted RBP7.46□□□□□ -1.22
SS18-220ENST00000582092 OR10W1Q8NGF6 305 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 LYPD6BQ8NI32 183 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 NANPQ8TBE9 248 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 RNASEH2CQ8TDP1 164 aaKnown RBP7.46□□□□□ -1.22
SS18-220ENST00000582092 SEC11CQ9BY50 192 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 MAP1LC3BQ9GZQ8 125 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 FBXL15Q9H469 300 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 TMEM160Q9NX00 188 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 CDC42EP3Q9UKI2 254 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 FAM96BQ9Y3D0 163 aa7.46□□□□□ -1.22
SS18-220ENST00000582092 AKAP9Q99996 3911 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 TRAV1-1A0A0B4J248 108 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 INS-IGF2F8WCM5 200 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 NPFFO15130 113 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 SFTA3P0C7M3 94 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 RNASE2P10153 161 aaKnown RBP7.45□□□□□ -1.22
SS18-220ENST00000582092 CDC34P49427 236 aaPredicted RBP7.45□□□□□ -1.22
SS18-220ENST00000582092 PSMB3P49720 205 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 CEBPGP53567 150 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 HAGHQ16775 308 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 TMEM144Q7Z5S9 345 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 OR1L6Q8NGR2 347 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 MBD3L1Q8WWY6 194 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 MISP3Q96FF7 219 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 RITA1Q96K30 269 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 RASL11BQ9BPW5 248 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 SRSF8Q9BRL6 282 aaKnown RBP7.45□□□□□ -1.22
SS18-220ENST00000582092 SLC35B3Q9H1N7 401 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 GNG13Q9P2W3 67 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 PXMP4Q9Y6I8 212 aa7.45□□□□□ -1.22
SS18-220ENST00000582092 FN1P02751 2386 aaKnown RBP7.45□□□□□ -1.22
SS18-220ENST00000582092 SONP18583 2426 aaKnown RBP7.44□□□□□ -1.22
SS18-220ENST00000582092 NSD1Q96L73 2696 aaPredicted RBP7.44□□□□□ -1.22
SS18-220ENST00000582092 A0A1B0GW64 132 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 ZFP92A6NM28 416 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 B4DSR2 109 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 TGFAP01135 160 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 CNTFRP26992 372 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 B2MP61769 119 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 RHOBP62745 196 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 CD69Q07108 199 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 FXYD3Q14802 87 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 KHDC3LQ587J8 217 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 SOHLH1Q5JUK2 328 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 SLC16A13Q7RTY0 426 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 NPBQ8NG41 125 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 SSMEM1Q8WWF3 244 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 ACY3Q96HD9 319 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 RCC1LQ96I51 464 aaKnown RBP7.44□□□□□ -1.22
SS18-220ENST00000582092 EAF1Q96JC9 268 aaPredicted RBP7.44□□□□□ -1.22
SS18-220ENST00000582092 SLC25A22Q9H936 323 aa7.44□□□□□ -1.22
SS18-220ENST00000582092 POLR3KQ9Y2Y1 108 aaPredicted RBP7.44□□□□□ -1.22
SS18-220ENST00000582092 WNK2Q9Y3S1 2297 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 A0A096LNT2 108 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 IGHV4-61A0A0C4DH41 118 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 FAM157AC9JC47 383 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 M0R036 132 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 SCGB2A1O75556 95 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 REG1AP05451 166 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 CD5P06127 495 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 FABP1P07148 127 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 CRYGBP07316 175 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 MSMBP08118 114 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 IGHV4-31P0DP07 118 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 GATA3P23771 443 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 RPL29P47914 159 aaKnown RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 FGF8P55075 233 aaPredicted RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 SRSF3P84103 164 aaKnown RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 PAX2Q02962 417 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 PAX8Q06710 450 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 KRTAP1-1Q07627 177 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 GAMTQ14353 236 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 ARSJQ5FYB0 599 aaPredicted RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 C10orf55Q5SWW7 151 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 MIC13Q5XKP0 118 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 HCP5Q6MZN7 132 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 ACSM6Q6P461 480 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 TEX29Q8N6K0 151 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 LINC01356Q8N9X3 169 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 RXFP4Q8TDU9 374 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 SRSF12Q8WXF0 261 aaKnown RBP7.43□□□□□ -1.22
SS18-220ENST00000582092 RAB24Q969Q5 203 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 TBX15Q96SF7 602 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 RNF2Q99496 336 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 P2RX4Q99571 388 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 MGST2Q99735 147 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 C19orf24Q9BVV8 132 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 C7orf69Q9H7B7 122 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 VSIRQ9H7M9 311 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 MANBALQ9NQG1 85 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 TPSG1Q9NRR2 321 aa7.43□□□□□ -1.22
SS18-220ENST00000582092 TRAV20A0A0B4J274 112 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 IGHV1-69DA0A0B4J2H0 117 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 PRSS46E5RG02 174 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms