RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 AURKAIP1Q9NWT8 199 aaPredicted RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 MIOXQ9UGB7 285 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 PITPNC1Q9UKF7 332 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 SMG1Q96Q15 3661 aaKnown RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 C1QTNF9P0C862 333 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 USF1P22415 310 aaPredicted RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 COL8A2P25067 703 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 CHRNB4P30926 498 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 ZNF137PP52743 207 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 DIAPH2-AS1Q14236 149 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 CLEC12BQ2HXU8 276 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 FAM78BQ5VT40 261 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 KCNIP4Q6PIL6 250 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 PDPNQ86YL7 162 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 OR4P4Q8NGL7 312 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 SLC35E1Q96K37 410 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 TMEM160Q9NX00 188 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 RPH3ALQ9UNE2 315 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 MUC6Q6W4X9 2439 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 ACACAQ13085 2346 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 APOBEC3AP31941 199 aaPredicted RBP8.17□□□□□ -1.1
VPS53-220ENST00000576149 LCN2P80188 198 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 CD69Q07108 199 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 TMEM155Q4W5P6 130 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 PDZD11Q5EBL8 140 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 MIR17HGQ75NE6 70 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 OR10D4PQ8NGN7 298 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 OR4A5Q8NH83 315 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 VSTM2AQ8TAG5 236 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 TMEM167AQ8TBQ9 72 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 C11orf52Q96A22 123 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 IMMP2LQ96T52 175 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 CLEC5AQ9NY25 188 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 FUT9Q9Y231 359 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 ATMQ13315 3056 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 E7EUB6 86 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 ACTL6BO94805 426 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 OR10J1P30954 320 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 ERHP84090 104 aaKnown RBP8.17□□□□□ -1.1
VPS53-220ENST00000576149 MLANAQ16655 118 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 PNKDQ8N490 385 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 CACNG8Q8WXS5 425 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 SFRP2Q96HF1 295 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 NEU1Q99519 415 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 WASHC3Q9Y3C0 194 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 ARL2-SNX15V9GYD0 113 aa8.17□□□□□ -1.1
VPS53-220ENST00000576149 APC2O95996 2303 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 IGHV1-69-2A0A0G2JMI3 117 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 IGLV2-23P01705 113 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 FAM87AP0C7U9 286 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 AREGP15514 252 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 GPX4P36969 197 aaPredicted RBP8.16□□□□□ -1.1
VPS53-220ENST00000576149 FOXL1Q12952 345 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 ACTL10Q5JWF8 245 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 OR9G1Q8NH87 305 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 OCC1Q8TAD7 63 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 C19orf24Q9BVV8 132 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 CHODLQ9H9P2 273 aa8.16□□□□□ -1.1
VPS53-220ENST00000576149 CGB1A6NKQ9 187 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 DLL1O00548 723 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 IGHV1-8P0DP01 117 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 GATA2P23769 480 aaPredicted RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 COA6Q5JTJ3 125 aaKnown RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 Q5PR19 223 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 TGIF2LXQ8IUE1 241 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 TMEM183AQ8IXX5 376 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 C11orf42Q8N5U0 333 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 UHRF2Q96PU4 802 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 TMEM167BQ9NRX6 74 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 TECRQ9NZ01 308 aaKnown RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 TNCP24821 2201 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 MAP1BP46821 2468 aaKnown RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 MDFIC2A0A1B0GVS7 189 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 C9JCJ5 164 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 IGHV2-70P01814 119 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 CD3EP07766 207 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 OR5G3P0C626 314 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 FABP4P15090 132 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 IL3RAP26951 378 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 PSG5Q15238 335 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 HLA-DRB5Q30154 266 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 ZNF503Q96F45 646 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 ZNF479Q96JC4 524 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 BTF3L4Q96K17 158 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 HIST1H2BLQ99880 126 aa8.15□□□□□ -1.1
VPS53-220ENST00000576149 ZNF430Q9H8G1 570 aaPredicted RBP8.15□□□□□ -1.1
VPS53-220ENST00000576149 TRBV23-1A0A0A0MS06 115 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 CRYGCP07315 174 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 MC5RP33032 325 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 WT1-ASQ06250 92 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 TEX38Q6PEX7 206 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 OR2T6Q8NHC8 308 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 ACY3Q96HD9 319 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 LY96Q9Y6Y9 160 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 ROS1P08922 2347 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 PLAUP00749 431 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 C10orf55Q5SWW7 151 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 SHISA2Q6UWI4 295 aa8.14□□□□□ -1.11
VPS53-220ENST00000576149 PQLC2Q6ZP29 291 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms