RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ABCA11PQ4W5N1 156 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TRMT12Q53H54 448 aaKnown RBP3.88□□□□□ -1.79
VPS53-219ENST00000576019 TMEM97Q5BJF2 176 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TMEM42Q69YG0 159 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TCF23Q7RTU1 214 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TMED4Q7Z7H5 227 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TMEM75Q8N9X5 138 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 OR5H2Q8NGV7 314 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 RAD51AP1Q96B01 352 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 SLC35E1Q96K37 410 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 NIPSNAP1Q9BPW8 284 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 PYGO2Q9BRQ0 406 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TRABDQ9H4I3 376 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 HMG20AQ9NP66 347 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 C8orf4Q9NR00 106 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 UBQLN4Q9NRR5 601 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 CBLN4Q9NTU7 201 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 C14orf105Q9NVL8 296 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 VPREB3Q9UKI3 123 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 SCN3AQ9NY46 2000 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 IGKV1-6A0A0C4DH72 117 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 ZNF878C9JN71 531 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 C9JQL5 133 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 COPEO14579 308 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 MSMBP08118 114 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 OR56A5P0C7T3 313 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 ZNF688P0C7X2 276 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 ESDP10768 282 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 MAP2K4P45985 399 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 TMEM267Q0VDI3 215 aaPredicted RBP3.87□□□□□ -1.79
VPS53-219ENST00000576019 NCMAPQ5T1S8 102 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 LCN8Q6JVE9 175 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 HIST2H3AQ71DI3 136 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 SMIM15Q7Z3B0 74 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 MED12LQ86YW9 2145 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 C15orf56Q8N910 161 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 OR2M3Q8NG83 312 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 OR9I1Q8NGQ6 314 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 OR5W2Q8NH69 310 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 APOBEC3DQ96AK3 386 aaPredicted RBP3.87□□□□□ -1.79
VPS53-219ENST00000576019 DIRAS2Q96HU8 199 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 LINC00527Q9UJ94 153 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 ZNF222Q9UK12 451 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 PKIGQ9Y2B9 76 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 CACNG2Q9Y698 323 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 DNAH6Q9C0G6 4158 aa3.87□□□□□ -1.79
VPS53-219ENST00000576019 IGHV7-4-1A0A0J9YVY3 117 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 C5orf49A4QMS7 147 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TMEM250H0YL14 139 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 PHOX2AO14813 284 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 LY6G6CO95867 125 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 CRYBA1P05813 215 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 FBP1P09467 338 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 RPS10P46783 165 aaKnown RBP3.86□□□□□ -1.79
VPS53-219ENST00000576019 CTBP2P56545 445 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 ESRRGP62508 458 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 HLA-DRB3P79483 266 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 SYCNQ0VAF6 134 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 FCN2Q15485 313 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 ACOT6Q3I5F7 207 aaPredicted RBP3.86□□□□□ -1.79
VPS53-219ENST00000576019 YIF1BQ5BJH7 314 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TEX30Q5JUR7 227 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TRIQKQ629K1 86 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 GLT6D1Q7Z4J2 308 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 LINC01551Q86U37 167 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 ORMDL3Q8N138 153 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 C11orf42Q8N5U0 333 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 NATD1Q8N6N6 113 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 YIPF7Q8N8F6 280 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 LINC01555Q8NAE3 123 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 OR2Z1Q8NG97 314 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 OR4E2Q8NGC2 313 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 OR2T4Q8NH00 348 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 ISOC1Q96CN7 298 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 MARVELD1Q9BSK0 173 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 DCSTAMPQ9H295 470 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TNFRSF19Q9NS68 423 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TAS2R7Q9NYW3 318 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 TAC3Q9UHF0 121 aa3.86□□□□□ -1.79
VPS53-219ENST00000576019 IGHV3-49A0A0A0MS15 119 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 OR6C6A6NF89 314 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 C2orf74A8MZ97 194 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 BPY2O14599 106 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 RGS5O15539 181 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 NOS1APO75052 506 aaPredicted RBP3.85□□□□□ -1.79
VPS53-219ENST00000576019 CXorf1O96002 111 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 LHBP01229 141 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 MAS1P04201 325 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 OR13C7P0DN81 318 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 ORM2P19652 201 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 TGFBR1P36897 503 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PSMB3P49720 205 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 GZMMP51124 257 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PSME3P61289 254 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PSG4Q00888 419 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 ATP5G2Q06055 141 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PSG7Q13046 419 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 PMAIP1Q13794 54 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 MRGPRG-AS1Q2M3A8 158 aa3.85□□□□□ -1.79
VPS53-219ENST00000576019 LIN52Q52LA3 116 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms