RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CSN3P07498 182 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 DEFB109BQ30KR1 87 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 BHLHA15Q7RTS1 189 aaPredicted RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 Q8N7P7 452 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 RNF2Q99496 336 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 SLC25A5P05141 298 aaKnown RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 GPX1P07203 203 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 GNG5P63218 68 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 ERHP84090 104 aaKnown RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 KIR2DL2P43627 348 aaPredicted RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 RPL8P62917 257 aaKnown RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 TNFAIP6P98066 277 aaPredicted RBP11.9□□□□□ -0.5
VPS35-210ENST00000568784 PMCHL1Q16048 86 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 ZNF835Q9Y2P0 537 aa11.9□□□□□ -0.5
VPS35-210ENST00000568784 IGHV1-18A0A0C4DH31 117 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 C20orf202A1L168 122 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 CD24P25063 80 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 V9GYV3 84 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 APOA2P02652 100 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 C3orf79P0CE67 100 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 HCP5Q6MZN7 132 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 C1orf229Q6ZS94 237 aaPredicted RBP11.89□□□□□ -0.51
VPS35-210ENST00000568784 WDR31Q8NA23 367 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 NPIPB3Q92617 1050 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 HES4Q9HCC6 221 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 DCAF16Q9NXF7 216 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 IDI2-AS1Q9NZ38 188 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 AMMECR1Q9Y4X0 333 aaPredicted RBP11.89□□□□□ -0.51
VPS35-210ENST00000568784 J3QW42 95 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 M0QZ24 198 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 YPEL1O60688 119 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 TCTAP57738 103 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 OR10X1Q8NGY0 326 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 YPEL2Q96QA6 119 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 PRNDQ9UKY0 176 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 GGTLC3B5MD39 225 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 C8orf88P0DMB2 117 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 OR1B1Q8NGR6 318 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 FAM168AQ92567 244 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 SSUH2Q9Y2M2 353 aa11.89□□□□□ -0.51
VPS35-210ENST00000568784 ZGRF1Q86YA3 2104 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 MMP23AO75900 390 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 MOSP00540 346 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 AMY1AP04745 511 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 DAZAP1Q96EP5 407 aaKnown RBP11.88□□□□□ -0.51
VPS35-210ENST00000568784 UQCR10Q9UDW1 63 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 CDC42EP3Q9UKI2 254 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 BDP1A6H8Y1 2624 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 ZNF324O75467 553 aaPredicted RBP11.88□□□□□ -0.51
VPS35-210ENST00000568784 KIR2DS2P43631 304 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 VAMP3Q15836 100 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 KLHDC1Q8N7A1 406 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 KCNS1Q96KK3 526 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 PAXXQ9BUH6 204 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 ZFHX2Q9C0A1 2572 aaPredicted RBP11.88□□□□□ -0.51
VPS35-210ENST00000568784 SRRM5B3KS81 715 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 HLA-DQA1P01909 254 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 PCP4P48539 62 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 PEAR1Q5VY43 1037 aaPredicted RBP11.88□□□□□ -0.51
VPS35-210ENST00000568784 UNQ5815/PRO19632Q6UWF5 114 aa11.88□□□□□ -0.51
VPS35-210ENST00000568784 A0A1W2PS18 150 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 MT-ND6P03923 174 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 CLEC5AQ9NY25 188 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 DYSFO75923 2080 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 APC2O95996 2303 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 LINC00310P59036 64 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 PRR7Q8TB68 274 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 A0A1W2PN81 502 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 SAA1P0DJI8 122 aaPredicted RBP11.87□□□□□ -0.51
VPS35-210ENST00000568784 EIF4EBP1Q13541 118 aaPredicted RBP11.87□□□□□ -0.51
VPS35-210ENST00000568784 MCRIP2Q9BUT9 160 aaKnown RBP11.87□□□□□ -0.51
VPS35-210ENST00000568784 RNF24Q9Y225 148 aa11.87□□□□□ -0.51
VPS35-210ENST00000568784 BMPR1BO00238 502 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 CCL3L1P16619 93 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 MORN5Q5VZ52 161 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 C10orf113Q5VZT2 155 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 TCF24Q7RTU0 167 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 C20orf144Q9BQM9 153 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 GNB1LQ9BYB4 327 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 RAB9BQ9NP90 201 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 LAMTOR2Q9Y2Q5 125 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 CBY1Q9Y3M2 126 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 TET2Q6N021 2002 aaPredicted RBP11.86□□□□□ -0.51
VPS35-210ENST00000568784 SH2D7A6NKC9 451 aaPredicted RBP11.86□□□□□ -0.51
VPS35-210ENST00000568784 TNFSF4P23510 183 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 CX3CL1P78423 397 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 TEX43Q6ZNM6 134 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 C1orf174Q8IYL3 243 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 CCL17Q92583 94 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 OR8B2Q96RD0 313 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 RNF7Q9UBF6 113 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 LOC102724200A0A096LPH7 203 aaPredicted RBP11.86□□□□□ -0.51
VPS35-210ENST00000568784 IGKV3-15P01624 115 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 SLAQ13239 276 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 MSMPQ1L6U9 139 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 LEMD1Q68G75 181 aa11.86□□□□□ -0.51
VPS35-210ENST00000568784 MALRD1Q5VYJ5 2156 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 KBTBD11-OT1A0A1B0GTJ5 212 aa11.85□□□□□ -0.51
VPS35-210ENST00000568784 SRRM4A7MD48 611 aaKnown RBP11.85□□□□□ -0.51
VPS35-210ENST00000568784 AREGP15514 252 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms