RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CCDC160A6NGH7 325 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 FCGR2BP31994 310 aaPredicted RBP11.01□□□□□ -0.65
CLN3-236ENST00000568558 APRG1Q8IVJ8 170 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 TMEM217Q8N7C4 229 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 OR6F1Q8NGZ6 308 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 OR1P1Q8NH06 330 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 RNF2Q99496 336 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 TSC22D3Q99576 134 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 NXF2Q9GZY0 626 aaKnown RBP11.01□□□□□ -0.65
CLN3-236ENST00000568558 TMEM14BQ9NUH8 114 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 FKBP11Q9NYL4 201 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 MTFP1Q9UDX5 166 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 DNAH6Q9C0G6 4158 aa11.01□□□□□ -0.65
CLN3-236ENST00000568558 IGHV7-4-1A0A0J9YVY3 117 aa11□□□□□ -0.65
CLN3-236ENST00000568558 CHEK1O14757 476 aa11□□□□□ -0.65
CLN3-236ENST00000568558 CD3DP04234 171 aa11□□□□□ -0.65
CLN3-236ENST00000568558 RELQ04864 619 aaPredicted RBP11□□□□□ -0.65
CLN3-236ENST00000568558 ZNF124Q15973 351 aa11□□□□□ -0.65
CLN3-236ENST00000568558 OR4D10Q8NGI6 311 aa11□□□□□ -0.65
CLN3-236ENST00000568558 MCFD2Q8NI22 146 aa11□□□□□ -0.65
CLN3-236ENST00000568558 DIRAS2Q96HU8 199 aa11□□□□□ -0.65
CLN3-236ENST00000568558 RHPN1-AS1Q9BWJ2 59 aa11□□□□□ -0.65
CLN3-236ENST00000568558 GABARAPH6UMI1 98 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 I3L2K1 104 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 NUPL2O15504 423 aaKnown RBP10.99□□□□□ -0.65
CLN3-236ENST00000568558 TNFSF8P32971 234 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 TSPAN5P62079 268 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 PHLDA2Q53GA4 152 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 TMEM116Q8NCL8 245 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 MISP3Q96FF7 219 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 OR10C1Q96KK4 312 aa10.99□□□□□ -0.65
CLN3-236ENST00000568558 FAM212BQ9NTI7 297 aaPredicted RBP10.99□□□□□ -0.65
CLN3-236ENST00000568558 RSL24D1Q9UHA3 163 aaKnown RBP10.99□□□□□ -0.65
CLN3-236ENST00000568558 IGHV3-49A0A0A0MS15 119 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 YIF1AO95070 293 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 TFPI2P48307 235 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 MFAP4P55083 255 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 IL18Q14116 193 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 RNASE10Q5GAN6 216 aaKnown RBP10.98□□□□□ -0.65
CLN3-236ENST00000568558 ZNF114Q8NC26 417 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 PHLDA1Q8WV24 401 aaPredicted RBP10.98□□□□□ -0.65
CLN3-236ENST00000568558 SMIM4Q8WVI0 70 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 SEC22AQ96IW7 307 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 TXN2Q99757 166 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 SOSTQ9BQB4 213 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 CSTL1Q9H114 145 aa10.98□□□□□ -0.65
CLN3-236ENST00000568558 IGKV3-7A0A075B6H7 116 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 MPTX1A8MV57 137 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 MT-CO2P00403 227 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 IGKV1-39P01597 117 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 CD74P04233 296 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 IGKV1D-39P04432 117 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 CMC4P56277 68 aaPredicted RBP10.97□□□□□ -0.65
CLN3-236ENST00000568558 PRCDQ00LT1 54 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 FAM90A2PQ658T7 463 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 FAAP20Q6NZ36 180 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 LPCAT3Q6P1A2 487 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 TBC1D26Q86UD7 250 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 LHFPL1Q86WI0 220 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 RPP25LQ8N5L8 163 aaKnown RBP10.97□□□□□ -0.65
CLN3-236ENST00000568558 TMEM229BQ8NBD8 167 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 OR4A16Q8NH70 328 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 C15orf40Q8WUR7 153 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 GATAD1Q8WUU5 269 aa10.97□□□□□ -0.65
CLN3-236ENST00000568558 TRAV14DV4A0A0A6YYC5 116 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 CTDSPLO15194 276 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 IGHV3-48P01763 117 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 PI3P19957 117 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 S100GP29377 79 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 H2BFWTQ7Z2G1 175 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 MRGPRFQ96AM1 343 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 RARRES2Q99969 163 aa10.96□□□□□ -0.65
CLN3-236ENST00000568558 HECTD4Q9Y4D8 3996 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 IGHV3OR16-13A0A075B7E8 117 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 IGHV3-74A0A0B4J1X5 117 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 FABP12A6NFH5 140 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 ZNF701M0R085 212 aaPredicted RBP10.95□□□□□ -0.66
CLN3-236ENST00000568558 GNG7O60262 68 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 RAB3DO95716 219 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 TBPP20226 339 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 PPP5CP53041 499 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 UCP3P55916 312 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 TAS2R19P59542 299 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 HSPE1P61604 102 aaKnown RBP10.95□□□□□ -0.66
CLN3-236ENST00000568558 MRPS10P82664 201 aaKnown RBP10.95□□□□□ -0.66
CLN3-236ENST00000568558 LGALS9CQ6DKI2 356 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 STEAP1BQ6NZ63 245 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 GBGT1Q8N5D6 347 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 PINX1Q96BK5 328 aaKnown RBP10.95□□□□□ -0.66
CLN3-236ENST00000568558 GINS3Q9BRX5 216 aa10.95□□□□□ -0.66
CLN3-236ENST00000568558 C11orf68Q9H3H3 251 aaKnown RBP10.95□□□□□ -0.66
CLN3-236ENST00000568558 GSTZ1O43708 216 aaPredicted RBP10.94□□□□□ -0.66
CLN3-236ENST00000568558 DEDDO75618 318 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 PGAM2P15259 253 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 SSBP1Q04837 148 aaKnown RBP10.94□□□□□ -0.66
CLN3-236ENST00000568558 TOMM20LQ6UXN7 152 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 TCF24Q7RTU0 167 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 ARRDC1Q8N5I2 433 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 OR11H2Q8NH07 326 aa10.94□□□□□ -0.66
CLN3-236ENST00000568558 V9GYH0 126 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms