RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 GCGP01275 180 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 FAM87AP0C7U9 286 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 HIST1H1BP16401 226 aaKnown RBP5.04□□□□□ -1.6
CLN3-223ENST00000566472 REG1BP48304 166 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 CNN1P51911 297 aaKnown RBP5.04□□□□□ -1.6
CLN3-223ENST00000566472 PLP1P60201 277 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 UBE2L3P68036 154 aaKnown RBP5.04□□□□□ -1.6
CLN3-223ENST00000566472 PRSS8Q16651 343 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 MRGPRG-AS1Q2M3A8 158 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 TIGITQ495A1 244 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 C4orf17Q53FE4 359 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 KIAA2026Q5HYC2 2103 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 ZNF841Q6ZN19 808 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 MUC15Q8N387 334 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 OR10W1Q8NGF6 305 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 SGMS2Q8NHU3 365 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 OCC1Q8TAD7 63 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 SMIM12Q96EX1 92 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 ZNF503Q96F45 646 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 PERPQ96FX8 193 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 FAM167A-AS1Q96KT0 104 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 PACRGQ96M98 296 aaPredicted RBP5.04□□□□□ -1.6
CLN3-223ENST00000566472 HIST1H2BLQ99880 126 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 DERL1Q9BUN8 251 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 SLC25A2Q9BXI2 301 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 TANC2Q9HCD6 1990 aa5.04□□□□□ -1.6
CLN3-223ENST00000566472 GTF3C1Q12789 2109 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 IGKV1D-37A0A075B6S9 117 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 PPIAL4CA0A0B4J2A2 164 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 IGHV1-3A0A0C4DH29 117 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 IGLC7A0M8Q6 106 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 HELTA6NFD8 242 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 FAM90A27PA6NNH2 459 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 GGTLC3B5MD39 225 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 BUB1B-PAK6H3BSN5 160 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 M0R1W7 72 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 ISLRO14498 428 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 SLC25A17O43808 307 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 AMBPP02760 352 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 MT-ND6P03923 174 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 PPIAL4GP0DN37 164 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 FABP4P15090 132 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 CRYBB3P26998 211 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 GNG4P50150 75 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 LGALS4P56470 323 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 ZNF90Q03938 601 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 DIAPH2-AS1Q14236 149 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 JOSD1Q15040 202 aaPredicted RBP5.03□□□□□ -1.6
CLN3-223ENST00000566472 RPEL1Q2QD12 228 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 CENPWQ5EE01 88 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 GFI1BQ5VTD9 330 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 C10orf113Q5VZT2 155 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 WDR73Q6P4I2 378 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 FAM231DQ6ZW35 169 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 MOB3BQ86TA1 216 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 TMEM116Q8NCL8 245 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 LY6G5BQ8NDX9 201 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 OR5T1Q8NG75 326 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 OR5AU1Q8NGC0 362 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 OR1L6Q8NGR2 347 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 OR2T6Q8NHC8 308 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 NEU4Q8WWR8 484 aaPredicted RBP5.03□□□□□ -1.6
CLN3-223ENST00000566472 TMEM37Q8WXS4 190 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 NPIPB3Q92617 1050 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 TMEM18Q96B42 140 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 FAM122AQ96E09 287 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 TIMD4Q96H15 378 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 IGF2BP2-AS1Q96M15 143 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 CHRDL1Q9BU40 450 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 PAXXQ9BUH6 204 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 RAB1BQ9H0U4 201 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 FNDC4Q9H6D8 234 aaPredicted RBP5.03□□□□□ -1.6
CLN3-223ENST00000566472 CDC42EP3Q9UKI2 254 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 TRAPPC1Q9Y5R8 145 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 INSIG2Q9Y5U4 225 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 V9GYV3 84 aa5.03□□□□□ -1.6
CLN3-223ENST00000566472 DYSFO75923 2080 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 PGPEP1LA6NFU8 196 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 LINC00587B1AMM8 73 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 E7EUB6 86 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 LY6LH3BQJ8 138 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 K7EN84 100 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 CCL21O00585 134 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 ENSAO43768 121 aaKnown RBP5.02□□□□□ -1.61
CLN3-223ENST00000566472 PLAUP00749 431 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 LIPFP07098 398 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 TNXAQ16473 311 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 C10orf55Q5SWW7 151 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 KIR3DL3Q8N743 410 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 OR11H6Q8NGC7 330 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 LINC01560Q8TB33 94 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 RPEQ96AT9 228 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 GNB1LQ9BYB4 327 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 TNFRSF19Q9NS68 423 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 ZNF355PQ9NSJ1 428 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 CBLN4Q9NTU7 201 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 SIGLEC9Q9Y336 463 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 F11RQ9Y624 299 aaKnown RBP5.02□□□□□ -1.61
CLN3-223ENST00000566472 BDP1A6H8Y1 2624 aa5.02□□□□□ -1.61
CLN3-223ENST00000566472 DSCAML1Q8TD84 2053 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms