RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PTTG1IPP53801 180 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 RANP62826 216 aaKnown RBP10.86□□□□□ -0.67
VPS4A-204ENST00000566354 SSMEM1Q8WWF3 244 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 C11orf52Q96A22 123 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 C1orf159Q96HA4 380 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 UHRF2Q96PU4 802 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 VPS25Q9BRG1 176 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 IFI27L2Q9H2X8 130 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 IGKV1D-17A0A075B6S4 117 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 SRRM5B3KS81 715 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 ESDP10768 282 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 RPL29P47914 159 aaKnown RBP10.85□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF134P52741 427 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 TPPP2P59282 170 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 TIMM23BQ5SRD1 257 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 TCF24Q7RTU0 167 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 OR4S2Q8NH73 311 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 TMEM106BQ9NUM4 274 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 DUSP13Q9UII6 198 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 TRGV10A0A0A0MS01 117 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 IGLV1-44P01699 117 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 THBS3P49746 956 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 SCGB2A2Q13296 93 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 UBE2V1Q13404 147 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 STPG3Q8N7X2 389 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 DDB2Q92466 427 aa10.85□□□□□ -0.67
VPS4A-204ENST00000566354 IGHV1-18A0A0C4DH31 117 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 C15orf61A6NNL5 157 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 K7EN84 100 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 SLC25A17O43808 307 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 AREGP15514 252 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 CRISP2P16562 243 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 NPY1RP25929 384 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 CFHR2P36980 270 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 RAB7AP51149 207 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 HSPE1P61604 102 aaKnown RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 OR2Z1Q8NG97 314 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 TBX15Q96SF7 602 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 PLCE1Q9P212 2302 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 IGHV2OR16-5A0A0B4J2B6 119 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 GRIFINA4D1Z8 144 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF705FA8MVS1 300 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 H0Y8G0 127 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF705DP0CH99 300 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF705BP0CI00 300 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 CBLN1P23435 193 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 UQCRFS1P47985 274 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF83P51522 516 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 LGALS4P56470 323 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ADORA2A-AS1P86434 159 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 HLA-DRB5Q30154 266 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 MRPL18Q9H0U6 180 aaKnown RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ENY2Q9NPA8 101 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 CBLN4Q9NTU7 201 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 FOXA2Q9Y261 457 aaPredicted RBP10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ARL2-SNX15V9GYD0 113 aa10.84□□□□□ -0.67
VPS4A-204ENST00000566354 ROS1P08922 2347 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 TET2Q6N021 2002 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-204ENST00000566354 FNDC10F2Z333 226 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 C16orf97H3BN30 126 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 SLC17A3O00476 420 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 C11orf42Q8N5U0 333 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 EAF1Q96JC9 268 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-204ENST00000566354 TMEM14BQ9NUH8 114 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 TP53TG3Q9ULZ0 132 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 ICE1Q9Y2F5 2266 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 TRBV9A0A0B4J1U6 114 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 IGHV3-13P01766 116 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 IGHV3-7P01780 117 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 PRR20EP86478 221 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 PRR20CP86479 221 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 PRR20DP86480 221 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 PRR20BP86481 221 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 PRR20AP86496 221 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 OR5I1Q13606 314 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 CDSNQ15517 529 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 RPEL1Q2QD12 228 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 SPATA31B1PQ5VZV4 182 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-204ENST00000566354 OR4P4Q8NGL7 312 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 WFDC12Q8WWY7 111 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 BBC3Q96PG8 261 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-204ENST00000566354 RAB9BQ9NP90 201 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 CALYQ9NYX4 217 aa10.83□□□□□ -0.68
VPS4A-204ENST00000566354 FAM90A27PA6NNH2 459 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 M0R1B8 84 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 FOXH1O75593 365 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 Q0VG73 95 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 OR4A47Q6IF82 309 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 Q6ZWC4 215 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 MMD2Q8IY49 270 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 OR1L6Q8NGR2 347 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 C20orf144Q9BQM9 153 aa10.82□□□□□ -0.68
VPS4A-204ENST00000566354 SLC25A10Q9UBX3 287 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-204ENST00000566354 FCN1O00602 326 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 SERF1AO75920 110 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 CA2P00918 260 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 CGB3P0DN86 165 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 CGB7P0DN87 165 aa10.81□□□□□ -0.68
VPS4A-204ENST00000566354 GNLYP22749 145 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms