RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 FBXO24O75426 580 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 CRYGCP07315 174 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 DEFA4P12838 97 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 VWC2Q2TAL6 325 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 PVRIGQ6DKI7 326 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 SLC35E3Q7Z769 313 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 TTC9CQ8N5M4 171 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 TMEM86BQ8N661 226 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 MISP3Q96FF7 219 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 DUX5Q96PT3 197 aa24.08■■□□□ 1.45
CTCF-203ENST00000566078 SMCO3A2RU48 225 aa24.07■■□□□ 1.44
CTCF-203ENST00000566078 IGHG2P01859 326 aa24.07■■□□□ 1.44
CTCF-203ENST00000566078 EXOSC2Q13868 293 aaKnown RBP24.07■■□□□ 1.44
CTCF-203ENST00000566078 ZNF680Q8NEM1 530 aa24.07■■□□□ 1.44
CTCF-203ENST00000566078 ARV1Q9H2C2 271 aa24.07■■□□□ 1.44
CTCF-203ENST00000566078 ALKAL2Q6UX46 152 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 OR5T1Q8NG75 326 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 GINS3Q9BRX5 216 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 GSX1Q9H4S2 264 aaPredicted RBP24.06■■□□□ 1.44
CTCF-203ENST00000566078 DMRT1Q9Y5R6 373 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 MTORP42345 2549 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 OPRK1P41145 380 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 CD69Q07108 199 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 ARSJQ5FYB0 599 aaPredicted RBP24.06■■□□□ 1.44
CTCF-203ENST00000566078 Q6ZS46 218 aa24.06■■□□□ 1.44
CTCF-203ENST00000566078 CYSRT1A8MQ03 144 aa24.05■■□□□ 1.44
CTCF-203ENST00000566078 CORTO00230 105 aa24.05■■□□□ 1.44
CTCF-203ENST00000566078 IFNA7P01567 189 aa24.05■■□□□ 1.44
CTCF-203ENST00000566078 SCGB1C1Q8TD33 95 aa24.05■■□□□ 1.44
CTCF-203ENST00000566078 DNAJC9-AS1A6NH13 148 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 G3V318 75 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 RGS13O14921 159 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 PRH1P02810 166 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 SLC16A13Q7RTY0 426 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 OR1L6Q8NGR2 347 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 FAM110DQ8TAY7 271 aaPredicted RBP24.04■■□□□ 1.44
CTCF-203ENST00000566078 TMEM68Q96MH6 324 aa24.04■■□□□ 1.44
CTCF-203ENST00000566078 WDR61Q9GZS3 305 aaKnown RBP24.04■■□□□ 1.44
CTCF-203ENST00000566078 CRIP2P52943 208 aaPredicted RBP24.03■■□□□ 1.44
CTCF-203ENST00000566078 RUNX1Q01196 453 aa24.03■■□□□ 1.44
CTCF-203ENST00000566078 MLANAQ16655 118 aa24.03■■□□□ 1.44
CTCF-203ENST00000566078 AKIRIN2Q53H80 203 aa24.03■■□□□ 1.44
CTCF-203ENST00000566078 PHYHIPLQ96FC7 376 aa24.03■■□□□ 1.44
CTCF-203ENST00000566078 PARD6GQ9BYG4 376 aaPredicted RBP24.03■■□□□ 1.44
CTCF-203ENST00000566078 FNDC4Q9H6D8 234 aaPredicted RBP24.03■■□□□ 1.44
CTCF-203ENST00000566078 LINC00527Q9UJ94 153 aa24.03■■□□□ 1.44
CTCF-203ENST00000566078 TRAV41A0A0B4J266 112 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 GPX4P36969 197 aaPredicted RBP24.02■■□□□ 1.44
CTCF-203ENST00000566078 AKR1C1Q04828 323 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 ZNF767PQ75MW2 155 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 TMED6Q8WW62 240 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 SH3BGRL3Q9H299 93 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 IGF1P05019 195 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 FGF7P21781 194 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 ATP6V0CP27449 155 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 SLC35E1Q96K37 410 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 UBQLN2Q9UHD9 624 aa24.02■■□□□ 1.44
CTCF-203ENST00000566078 INAFM1C9JVW0 142 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 FNDC10F2Z333 226 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 TREML4Q6UXN2 200 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 CACNG8Q8WXS5 425 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 TAF15Q92804 592 aaKnown RBP eCLIP24.01■■□□□ 1.43
CTCF-203ENST00000566078 NPFFR1Q9GZQ6 430 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 WDR83OSQ9Y284 106 aa24.01■■□□□ 1.43
CTCF-203ENST00000566078 NSD1Q96L73 2696 aaPredicted RBP24.01■■□□□ 1.43
CTCF-203ENST00000566078 SCARB1Q8WTV0 552 aa24■■□□□ 1.43
CTCF-203ENST00000566078 SLC25A32Q9H2D1 315 aa24■■□□□ 1.43
CTCF-203ENST00000566078 NPVFQ9HCQ7 196 aa24■■□□□ 1.43
CTCF-203ENST00000566078 IGLV11-55A0A075B6I3 123 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 AP4M1O00189 453 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 CYB5BO43169 146 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 MT-CO2P00403 227 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 IGHV3-48P01763 117 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 GAMTQ14353 236 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 C19orf54Q5BKX5 351 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 ETFRF1Q6IPR1 90 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 OR2T6Q8NHC8 308 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 GNPNAT1Q96EK6 184 aaPredicted RBP23.99■■□□□ 1.43
CTCF-203ENST00000566078 NOL4LQ96MY1 436 aaPredicted RBP23.99■■□□□ 1.43
CTCF-203ENST00000566078 FANCD2OSQ96PS1 177 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 RSG1Q9BU20 258 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 ESM1Q9NQ30 184 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 RFNGQ9Y644 331 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 IGHV3-21A0A0B4J1V1 117 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 RPS10-NUDT3A0A1W2PQS6 291 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 SPP1P10451 314 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 MDKP21741 143 aaPredicted RBP23.99■■□□□ 1.43
CTCF-203ENST00000566078 EIF5AL1Q6IS14 154 aaKnown RBP23.99■■□□□ 1.43
CTCF-203ENST00000566078 BTNL8Q6UX41 500 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 PRSS22Q9GZN4 317 aa23.99■■□□□ 1.43
CTCF-203ENST00000566078 TRIM77I1YAP6 450 aa23.98■■□□□ 1.43
CTCF-203ENST00000566078 TMEM95Q3KNT9 176 aa23.98■■□□□ 1.43
CTCF-203ENST00000566078 FAM74A1Q5RGS3 127 aa23.98■■□□□ 1.43
CTCF-203ENST00000566078 ACY3Q96HD9 319 aa23.98■■□□□ 1.43
CTCF-203ENST00000566078 I3L2K1 104 aa23.97■■□□□ 1.43
CTCF-203ENST00000566078 SEC11BP0C7V7 166 aa23.96■■□□□ 1.43
CTCF-203ENST00000566078 TEPPQ6URK8 271 aa23.96■■□□□ 1.43
CTCF-203ENST00000566078 ZNF418Q8TF45 676 aaPredicted RBP23.96■■□□□ 1.43
CTCF-203ENST00000566078 NPCDR1Q9BY65 106 aa23.96■■□□□ 1.43
CTCF-203ENST00000566078 ZNF702PQ9H963 129 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms