RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SCGB3A2Q96PL1 93 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 PRR25Q96S07 402 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 MCRIP2Q9BUT9 160 aaKnown RBP7.46□□□□□ -1.22
CLN3-220ENST00000566040 C20orf85Q9H1P6 137 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 PLEKHA3Q9HB20 300 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 BATF3Q9NR55 127 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 TRBV7-1A0A0A6YYK4 115 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 IGHV3-35A0A0C4DH35 117 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 LGALS9O00182 355 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 TGOLN2O43493 480 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 UPK1BO75841 260 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 MT-CO2P00403 227 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 CLEC3BP05452 202 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 CTSGP08311 255 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 OR4E1P0C645 316 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SULT1A3P0DMM9 295 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SULT1A4P0DMN0 295 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SPNP16150 400 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 ARL3P36405 182 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SPCS3P61009 180 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 TNFRSF9Q07011 255 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SLC25A24Q6NUK1 477 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 LYG2Q86SG7 212 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 GPHB5Q86YW7 130 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 LGI3Q8N145 548 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 Q8N1Y9 231 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 EEF1AKMT3Q96AZ1 226 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 RRNAD1Q96FB5 475 aaKnown RBP7.45□□□□□ -1.22
CLN3-220ENST00000566040 RBKSQ9H477 322 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.45□□□□□ -1.22
CLN3-220ENST00000566040 SIGLEC8Q9NYZ4 499 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 SELENOKQ9Y6D0 94 aa7.45□□□□□ -1.22
CLN3-220ENST00000566040 CSMD3Q7Z407 3707 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 DUXBA0A1W2PPF3 345 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 OR2T8A6NH00 312 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 C2orf70A6NJV1 201 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 PRSS46E5RG02 174 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 GGCTO75223 188 aaKnown RBP7.44□□□□□ -1.22
CLN3-220ENST00000566040 SAP30O75446 220 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 TCRBP04435 133 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 DEFA4P12838 97 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 VAMP1P23763 118 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 SMCO1Q147U7 214 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 RPEL1Q2QD12 228 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 GGNBP1Q5YKI7 109 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 S100ZQ8WXG8 99 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 TMEM190Q8WZ59 177 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 CXorf58Q96LI9 332 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 ATP6V0BQ99437 205 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 ZFAND3Q9H8U3 227 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 NUDT15Q9NV35 164 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 C21orf62Q9NYP8 219 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 MLXQ9UH92 298 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 NBEAL2Q6ZNJ1 2754 aa7.44□□□□□ -1.22
CLN3-220ENST00000566040 TRAV6A0A075B6T7 132 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 IGHV3OR16-8A0A075B7F1 116 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 A0A1B0GU03 582 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 C15orf62A8K5M9 175 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 ATG12O94817 140 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 TMEM50AO95807 157 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 DHFRP00374 187 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 IFNA17P01571 189 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 IGKV1-17P01599 117 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 C8orf88P0DMB2 117 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 SLC25A6P12236 298 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 HOXA1P49639 335 aaPredicted RBP7.43□□□□□ -1.22
CLN3-220ENST00000566040 INSL3P51460 131 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 SRPXP78539 464 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 TM4SF20Q53R12 229 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 C2orf83Q53S99 150 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 FAM209BQ5JX69 171 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 OR4D5Q8NGN0 318 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 MITD1Q8WV92 249 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 MISP3Q96FF7 219 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 OR10C1Q96KK4 312 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 SEC22CQ9BRL7 303 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 C11orf1Q9H5F2 150 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 ZNF256Q9Y2P7 627 aaPredicted RBP7.43□□□□□ -1.22
CLN3-220ENST00000566040 KCNIP3Q9Y2W7 256 aa7.43□□□□□ -1.22
CLN3-220ENST00000566040 ZNF785A8K8V0 405 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 HOXB5P09067 269 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 FOLR2P14207 255 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 PAX9P55771 341 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 ZNF846Q147U1 533 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 RNASE11Q8TAA1 199 aaKnown RBP7.42□□□□□ -1.22
CLN3-220ENST00000566040 MRAPQ8TCY5 172 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 BSCL2Q96G97 398 aaPredicted RBP7.42□□□□□ -1.22
CLN3-220ENST00000566040 OR4C12Q96R67 309 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 GPR61Q9BZJ8 451 aa7.42□□□□□ -1.22
CLN3-220ENST00000566040 WDR12Q9GZL7 423 aaKnown RBP7.42□□□□□ -1.22
CLN3-220ENST00000566040 IGKV1D-37A0A075B6S9 117 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 PMS2P5A8MQ11 134 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 CCSO14618 274 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 SCAF4O95104 1147 aaKnown RBP7.41□□□□□ -1.22
CLN3-220ENST00000566040 ANXA3P12429 323 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 GP9P14770 177 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 INPP1P49441 399 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 ERHP84090 104 aaKnown RBP7.41□□□□□ -1.22
CLN3-220ENST00000566040 ID3Q02535 119 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 IL15RAQ13261 267 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms