RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 VWC2LB2RUY7 222 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 M0R036 132 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 HLA-DRB1P01911 266 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 MT-ND4LP03901 98 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 SRP19P09132 144 aaKnown RBP6.04□□□□□ -1.44
VPS39-204ENST00000561818 OR5G3P0C626 314 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 AREGP15514 252 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 HOXB4P17483 251 aaPredicted RBP6.04□□□□□ -1.44
VPS39-204ENST00000561818 RAB9AP51151 201 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 LINC00205P59089 165 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 LMO4P61968 165 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 GAMTQ14353 236 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 HES1Q14469 280 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 ICAM4Q14773 271 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 GUCA2BQ16661 112 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 RNF212Q495C1 297 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 ARSJQ5FYB0 599 aaPredicted RBP6.04□□□□□ -1.44
VPS39-204ENST00000561818 ACSM6Q6P461 480 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 FAM122CQ6P4D5 195 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 SPNS3Q6ZMD2 512 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 C1orf229Q6ZS94 237 aaPredicted RBP6.04□□□□□ -1.44
VPS39-204ENST00000561818 ZNF843Q8N446 348 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 OR4X1Q8NH49 305 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 CFHR4Q92496 578 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 ARPC1AQ92747 370 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 SMIM12Q96EX1 92 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 PERPQ96FX8 193 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 SLC25A22Q9H936 323 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 DOK5Q9P104 306 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 FUT9Q9Y231 359 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 FAM96BQ9Y3D0 163 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 YLPM1P49750 1951 aaKnown RBP6.04□□□□□ -1.44
VPS39-204ENST00000561818 A0A1W2PRE2 83 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 FAM74A7A6NL05 159 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 ZNF727A8MUV8 499 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 C11orf94C9JXX5 98 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 NPFFO15130 113 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 COX7A2P2O60397 106 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 IGKV1D-33P01593 117 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 IGKV1-33P01594 117 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 IGHV4-39P01824 125 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 OPN1MWP04001 364 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 S100A9P06702 114 aaKnown RBP6.03□□□□□ -1.44
VPS39-204ENST00000561818 CRYGCP07315 174 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 MSMBP08118 114 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 C8orf88P0DMB2 117 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 OPN1MW2P0DN77 364 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 OPN1MW3P0DN78 364 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 TMEM11P17152 192 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 ADCYAP1P18509 176 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 S100PP25815 95 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 FCGR2BP31994 310 aaPredicted RBP6.03□□□□□ -1.44
VPS39-204ENST00000561818 PLP1P60201 277 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 WT1-ASQ06250 92 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 PAX8Q06710 450 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 BTN1A1Q13410 526 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 HAGHQ16775 308 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 SPINK9Q5DT21 86 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 PRSS57Q6UWY2 283 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 RXFP4Q8TDU9 374 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 ABHD5Q8WTS1 349 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 ANAPC16Q96DE5 110 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 C1orf159Q96HA4 380 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 EAF1Q96JC9 268 aaPredicted RBP6.03□□□□□ -1.44
VPS39-204ENST00000561818 RBM14Q96PK6 669 aaKnown RBP6.03□□□□□ -1.44
VPS39-204ENST00000561818 RASL11BQ9BPW5 248 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 SCRT1Q9BWW7 348 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 TMEM231Q9H6L2 316 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 DNAJC4Q9NNZ3 241 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 BIN3Q9NQY0 253 aa6.03□□□□□ -1.44
VPS39-204ENST00000561818 SPENQ96T58 3664 aaKnown RBP6.03□□□□□ -1.44
VPS39-204ENST00000561818 ITPR1Q14643 2758 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 H3BQ15 152 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 H3BUA1 57 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 C19orf84I3L1E1 186 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 BRI3O95415 125 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 LINC00869P0C866 280 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 FOLR2P14207 255 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 CTRB1P17538 263 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 LCN2P80188 198 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 FLI1Q01543 452 aaPredicted RBP6.02□□□□□ -1.45
VPS39-204ENST00000561818 FXYD3Q14802 87 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 ZNF726P1Q15940 193 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 TMEM241Q24JQ0 296 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 KLK9Q2XQG4 91 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 AWAT1Q58HT5 328 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 FAM78BQ5VT40 261 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 C10orf113Q5VZT2 155 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 CTRB2Q6GPI1 263 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 IQCF2Q8IXL9 164 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 TTC9CQ8N5M4 171 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 Q8N6K4 173 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 CYB561D1Q8N8Q1 229 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 VN1R17PQ8TDU5 208 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 MBD6Q96DN6 1003 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 MISP3Q96FF7 219 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 IMMP2LQ96T52 175 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 SMIM7Q9BQ49 75 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 RPS10P5Q9NQ39 176 aa6.02□□□□□ -1.45
VPS39-204ENST00000561818 TNFRSF19Q9NS68 423 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms