RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CD3DP04234 171 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 FCGR2BP31994 310 aaPredicted RBP14.03□□□□□ -0.16
VPS35-202ENST00000561713 RORCP51449 518 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 AKR1C2P52895 323 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 MFAP4P55083 255 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 PIGPP57054 158 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 TNFRSF9Q07011 255 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 RNASE10Q5GAN6 216 aaKnown RBP14.03□□□□□ -0.16
VPS35-202ENST00000561713 ZNF114Q8NC26 417 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 CMTM3Q96MX0 182 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 ATP6V0BQ99437 205 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 RHPN1-AS1Q9BWJ2 59 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 FAM212BQ9NTI7 297 aaPredicted RBP14.03□□□□□ -0.16
VPS35-202ENST00000561713 AGRNO00468 2067 aa14.02□□□□□ -0.16
VPS35-202ENST00000561713 K7EMT4 169 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 CHEK1O14757 476 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 SPRY2O43597 315 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 GABARAPO95166 117 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 HSPE1P61604 102 aaKnown RBP14.02□□□□□ -0.17
VPS35-202ENST00000561713 RELQ04864 619 aaPredicted RBP14.02□□□□□ -0.17
VPS35-202ENST00000561713 CTF1Q16619 201 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 LHFPL1Q86WI0 220 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 GBGT1Q8N5D6 347 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 SLC35G3Q8N808 338 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 TMEM116Q8NCL8 245 aa14.02□□□□□ -0.17
VPS35-202ENST00000561713 IGHV3-66A0A0C4DH42 116 aa14.01□□□□□ -0.17
VPS35-202ENST00000561713 GNG7O60262 68 aa14.01□□□□□ -0.17
VPS35-202ENST00000561713 DEDDO75618 318 aa14.01□□□□□ -0.17
VPS35-202ENST00000561713 FAAP20Q6NZ36 180 aa14.01□□□□□ -0.17
VPS35-202ENST00000561713 WFDC3Q8IUB2 231 aa14.01□□□□□ -0.17
VPS35-202ENST00000561713 NXF2Q9GZY0 626 aaKnown RBP14.01□□□□□ -0.17
VPS35-202ENST00000561713 A0A0G2JRQ6 117 aa14□□□□□ -0.17
VPS35-202ENST00000561713 ST8SIA3O43173 380 aa14□□□□□ -0.17
VPS35-202ENST00000561713 P0C879 139 aa14□□□□□ -0.17
VPS35-202ENST00000561713 RND3P61587 244 aa14□□□□□ -0.17
VPS35-202ENST00000561713 SP6Q3SY56 376 aa14□□□□□ -0.17
VPS35-202ENST00000561713 GPR107Q5VW38 600 aa14□□□□□ -0.17
VPS35-202ENST00000561713 MZT2AQ6P582 158 aa14□□□□□ -0.17
VPS35-202ENST00000561713 Q6ZWC4 215 aa14□□□□□ -0.17
VPS35-202ENST00000561713 ST8SIA2Q92186 375 aa14□□□□□ -0.17
VPS35-202ENST00000561713 OR10C1Q96KK4 312 aa14□□□□□ -0.17
VPS35-202ENST00000561713 ABHD1Q96SE0 405 aa14□□□□□ -0.17
VPS35-202ENST00000561713 KIAA1109Q2LD37 5005 aa14□□□□□ -0.17
VPS35-202ENST00000561713 A0A0B4J293 547 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 APOHP02749 345 aaPredicted RBP13.99□□□□□ -0.17
VPS35-202ENST00000561713 BMI1P35226 326 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 HOXA1P49639 335 aaPredicted RBP13.99□□□□□ -0.17
VPS35-202ENST00000561713 ERHP84090 104 aaKnown RBP13.99□□□□□ -0.17
VPS35-202ENST00000561713 TRIM16LQ309B1 348 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 SCGB2B2Q4G0G5 96 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 STPG3Q8N7X2 389 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 OR13C8Q8NGS7 320 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 AP3S1Q92572 193 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 MAP6D1Q9H9H5 199 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 MRPL36Q9P0J6 103 aaKnown RBP13.99□□□□□ -0.17
VPS35-202ENST00000561713 TP53TG1Q9Y2A0 90 aa13.99□□□□□ -0.17
VPS35-202ENST00000561713 KLK5Q9Y337 293 aaPredicted RBP13.99□□□□□ -0.17
VPS35-202ENST00000561713 C3orf85A0A1B0GTC6 90 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 IFNA17P01571 189 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 TOMM20LQ6UXN7 152 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 TCF24Q7RTU0 167 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 ARRDC1Q8N5I2 433 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 MARCH1Q8TCQ1 289 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 RNF183Q96D59 192 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 MIXL1Q9H2W2 232 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 ZFAND3Q9H8U3 227 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 MTFP1Q9UDX5 166 aa13.98□□□□□ -0.17
VPS35-202ENST00000561713 RYR1P21817 5038 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 TRAV14DV4A0A0A6YYC5 116 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 KIR2DL5BA0A0G2JN68 375 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 KIR2DL5BA0A0G2JPC4 375 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 RNASE2P10153 161 aaKnown RBP13.97□□□□□ -0.17
VPS35-202ENST00000561713 ZNF182P17025 639 aaPredicted RBP13.97□□□□□ -0.17
VPS35-202ENST00000561713 ETV6P41212 452 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 KIR2DL5AQ8N109 375 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 LILRB2Q8N423 598 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 KIR2DL5BQ8NHK3 375 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 RNASE11Q8TAA1 199 aaKnown RBP13.97□□□□□ -0.17
VPS35-202ENST00000561713 GALNT14Q96FL9 552 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 ZNF486Q96H40 463 aaPredicted RBP13.97□□□□□ -0.17
VPS35-202ENST00000561713 TXN2Q99757 166 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 COPZ2Q9P299 210 aa13.97□□□□□ -0.17
VPS35-202ENST00000561713 PUS1Q9Y606 427 aaKnown RBP eCLIP13.97□□□□□ -0.17
VPS35-202ENST00000561713 A0A1B0GU03 582 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 UBE2CO00762 179 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 RAB3DO95716 219 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 SNCAP37840 140 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 FAM90A2PQ658T7 463 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 FAM24BQ8N5W8 94 aa13.96□□□□□ -0.17
VPS35-202ENST00000561713 ATF4P18848 351 aaPredicted RBP13.95□□□□□ -0.18
VPS35-202ENST00000561713 TBPP20226 339 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 LEMD1Q68G75 181 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 CCDC71LQ8N9Z2 235 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 LHFPL5Q8TAF8 219 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 GINS3Q9BRX5 216 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 PDCD10Q9BUL8 212 aa13.95□□□□□ -0.18
VPS35-202ENST00000561713 FNDC4Q9H6D8 234 aaPredicted RBP13.95□□□□□ -0.18
VPS35-202ENST00000561713 DNAH6Q9C0G6 4158 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 RGS5O15539 181 aa13.94□□□□□ -0.18
VPS35-202ENST00000561713 DFFBO76075 338 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms