RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 LHX4Q969G2 390 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 LSM10Q969L4 123 aaKnown RBP2.5□□□□□ -2.01
SPG11-225ENST00000561391 TOMM40LQ969M1 308 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 TMEM230Q96A57 120 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 GNPNAT1Q96EK6 184 aaPredicted RBP2.5□□□□□ -2.01
SPG11-225ENST00000561391 UHRF2Q96PU4 802 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 RAB40CQ96S21 281 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 DCTN5Q9BTE1 182 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 CABLES2Q9BTV7 478 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 ADAT1Q9BUB4 502 aaKnown RBP2.5□□□□□ -2.01
SPG11-225ENST00000561391 OR2J1Q9GZK6 312 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 EGLN1Q9GZT9 426 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 SLC5A7Q9GZV3 580 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 SMDT1Q9H4I9 107 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 PATZ1Q9HBE1 687 aaKnown RBP2.5□□□□□ -2.01
SPG11-225ENST00000561391 TAF9BQ9HBM6 251 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 HES4Q9HCC6 221 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 SDHAF2Q9NX18 166 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 TAS2R3Q9NYW6 316 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 MBD2Q9UBB5 411 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 VPREB3Q9UKI3 123 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 SMAD5-AS1Q9Y6J3 95 aa2.5□□□□□ -2.01
SPG11-225ENST00000561391 IGKV1D-8A0A087WSZ0 117 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 TRAV24A0A0B4J272 114 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 IGHV2OR16-5A0A0B4J2B6 119 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 IGHV1-69DA0A0B4J2H0 117 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 IGHV2-70DA0A0C4DH43 119 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 TCRBV4S1A1TA0A5B7 111 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 A8MXK9 166 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 I3L521 148 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 SLC33A1O00400 549 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 TOR1AO14656 332 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ITGB1BP1O14713 200 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CDIPTO14735 213 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 BET1O15155 118 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 FGF16O43320 207 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 NDUFA2O43678 99 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 SYNGR1O43759 233 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 PGLYRP1O75594 196 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 ADAP1O75689 374 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 DFFBO76075 338 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 OR2H2O95918 312 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 HAND1O96004 215 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CFDP00746 253 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 IGHV1-69P01742 117 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 SCTP09683 121 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 OR5AC1P0C628 307 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 FRMD6-AS1P0C7T7 363 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 INAFM2P0DMQ5 153 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ZP3P21754 424 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 F2RP25116 425 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 UCP1P25874 307 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 PRDX2P32119 198 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CEACAM6P40199 344 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 NKX2-1P43699 371 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 ATP5IP56385 69 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 KLF3P57682 345 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 S100A10P60903 97 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 RPL23AP62750 156 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 HLA-DRB3P79483 266 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 HTD2P86397 168 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 PAX2Q02962 417 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CATR1Q13166 79 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ATXN7L3Q14CW9 347 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 LY6EQ16553 131 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 AANATQ16613 207 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 VWC2Q2TAL6 325 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CST9LP1Q5W188 147 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ALKAL2Q6UX46 152 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 DPPA3Q6W0C5 159 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 IL34Q6ZMJ4 242 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 TRPT1Q86TN4 253 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 STX12Q86Y82 276 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 H1FOOQ8IZA3 346 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 SELENOHQ8IZQ5 122 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 SPAG16Q8N0X2 631 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ZNF383Q8NA42 475 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 LFNGQ8NES3 379 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 OR1S1Q8NH92 325 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 MRPL30Q8TCC3 161 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 MAFIPQ8WZ33 124 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 ARL11Q969Q4 196 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 OR10C1Q96KK4 312 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 SGK494Q96LW2 274 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 CIB3Q96Q77 187 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 HSD17B10Q99714 261 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 HDHD3Q9BSH5 251 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 MCRIP2Q9BUT9 160 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 PBDC1Q9BVG4 233 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 TOLLIPQ9H0E2 274 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 PARP11Q9NR21 331 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 DCAF16Q9NXF7 216 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 COA4Q9NYJ1 87 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 IL19Q9UHD0 177 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 GAB2Q9UQC2 676 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 STRAPQ9Y3F4 350 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 RBM7Q9Y580 266 aaKnown RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 WSB1Q9Y6I7 421 aa2.49□□□□□ -2.01
SPG11-225ENST00000561391 DMBT1Q9UGM3 2413 aaPredicted RBP2.49□□□□□ -2.01
SPG11-225ENST00000561391 KMT2AQ03164 3969 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms