RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 APRG1Q8IVJ8 170 aa7.58□□□□□ -1.2
LDLR-214ENST00000560628 GBGT1Q8N5D6 347 aa7.58□□□□□ -1.2
LDLR-214ENST00000560628 TXN2Q99757 166 aa7.58□□□□□ -1.2
LDLR-214ENST00000560628 NXF2Q9GZY0 626 aaKnown RBP7.58□□□□□ -1.2
LDLR-214ENST00000560628 MTFP1Q9UDX5 166 aa7.58□□□□□ -1.2
LDLR-214ENST00000560628 TRAV14DV4A0A0A6YYC5 116 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 A0A0J9YWU9 116 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 CTDSP2O14595 271 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ST8SIA3O43173 380 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 RAB3DO95716 219 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 SNCAP37840 140 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 AKR1C2P52895 323 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 EWSR1Q01844 656 aaKnown RBP eCLIP7.57□□□□□ -1.2
LDLR-214ENST00000560628 PMS2P11Q13670 270 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ZNF124Q15973 351 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 MLANAQ16655 118 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 TRIM16LQ309B1 348 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 DEFB135Q30KP9 77 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 WFDC3Q8IUB2 231 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ARRDC1Q8N5I2 433 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 STPG3Q8N7X2 389 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 SLC35G3Q8N808 338 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 TMEM229BQ8NBD8 167 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ZNF114Q8NC26 417 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 OR13C8Q8NGS7 320 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 TERB2Q8NHR7 220 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ZFAND1Q8TCF1 268 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 MARCH1Q8TCQ1 289 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 ZNF486Q96H40 463 aaPredicted RBP7.57□□□□□ -1.2
LDLR-214ENST00000560628 MIXL1Q9H2W2 232 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 COPZ2Q9P299 210 aa7.57□□□□□ -1.2
LDLR-214ENST00000560628 RYR2Q92736 4967 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 IGHV3-66A0A0C4DH42 116 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 CXorf65A6NEN9 183 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 UBE2CO00762 179 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 RGS5O15539 181 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 TMEM50AO95807 157 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 APOHP02749 345 aaPredicted RBP7.56□□□□□ -1.2
LDLR-214ENST00000560628 P0C879 139 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 TBPP20226 339 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 FCGR2BP31994 310 aaPredicted RBP7.56□□□□□ -1.2
LDLR-214ENST00000560628 BMI1P35226 326 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 FAAP20Q6NZ36 180 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 STEAP1BQ6NZ63 245 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 TOMM20LQ6UXN7 152 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 Q6ZWC4 215 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 LYG2Q86SG7 212 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 LILRB2Q8N423 598 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 CCDC71LQ8N9Z2 235 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 DUSP18Q8NEJ0 188 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 RNASE11Q8TAA1 199 aaKnown RBP7.56□□□□□ -1.2
LDLR-214ENST00000560628 RRNAD1Q96FB5 475 aaKnown RBP7.56□□□□□ -1.2
LDLR-214ENST00000560628 OR10C1Q96KK4 312 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 PDCD10Q9BUL8 212 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 STARD9Q9P2P6 4700 aa7.56□□□□□ -1.2
LDLR-214ENST00000560628 CSMD3Q7Z407 3707 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 KIR2DL5BA0A0G2JN68 375 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 KIR2DL5BA0A0G2JPC4 375 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 A0A0G2JRQ6 117 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 GABARAPH6UMI1 98 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 ATG12O94817 140 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 CD74P04233 296 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 RNASE2P10153 161 aaKnown RBP7.55□□□□□ -1.2
LDLR-214ENST00000560628 NPBWR1P48145 328 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 HOXA1P49639 335 aaPredicted RBP7.55□□□□□ -1.2
LDLR-214ENST00000560628 TAS2R19P59542 299 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 SPCS2Q15005 226 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 FAM90A2PQ658T7 463 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 Q6ZRM9 215 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 TCF24Q7RTU0 167 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 GPR141Q7Z602 305 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 KIR2DL5AQ8N109 375 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 KIR2DL5BQ8NHK3 375 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 C15orf40Q8WUR7 153 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 ST8SIA2Q92186 375 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 RNF183Q96D59 192 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 GALNT14Q96FL9 552 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 MAP6D1Q9H9H5 199 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 ENY2Q9NPA8 101 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 MRPL36Q9P0J6 103 aaKnown RBP7.55□□□□□ -1.2
LDLR-214ENST00000560628 TP53TG1Q9Y2A0 90 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 PUS1Q9Y606 427 aaKnown RBP eCLIP7.55□□□□□ -1.2
LDLR-214ENST00000560628 SACSQ9NZJ4 4579 aa7.55□□□□□ -1.2
LDLR-214ENST00000560628 TEX13DA0A0J9YY54 714 aaPredicted RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 A0A1B0GU03 582 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 DFFBO76075 338 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 OR5AC1P0C628 307 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 UCP1P25874 307 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 ALDH3B2P48448 385 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 SUB1P53999 127 aaKnown RBP eCLIP7.54□□□□□ -1.2
LDLR-214ENST00000560628 CMC4P56277 68 aaPredicted RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 RPL11P62913 178 aaKnown RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 ZNF600Q6ZNG1 722 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 GINS3Q9BRX5 216 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 RTBDNQ9BSG5 229 aaPredicted RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 MRPS26Q9BYN8 205 aaKnown RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 C6orf62Q9GZU0 229 aaPredicted RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 CSTL1Q9H114 145 aa7.54□□□□□ -1.2
LDLR-214ENST00000560628 FNDC4Q9H6D8 234 aaPredicted RBP7.54□□□□□ -1.2
LDLR-214ENST00000560628 C14orf166Q9Y224 244 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms