RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LOC102724200A0A096LPH7 203 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-205ENST00000559898 CHEK1O14757 476 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 TSPAN4O14817 238 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 RGS5O15539 181 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 CYB5BO43169 146 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 RAB3DO95716 219 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 APOHP02749 345 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-205ENST00000559898 S100GP29377 79 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 ETV6P41212 452 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 STEAP1BQ6NZ63 245 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 CLVS1Q8IUQ0 354 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-205ENST00000559898 ARRDC1Q8N5I2 433 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 RTBDNQ9BSG5 229 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-205ENST00000559898 SMPXQ9UHP9 88 aa13.15□□□□□ -0.3
HDDC3-205ENST00000559898 EPPK1P58107 5090 aaKnown RBP13.15□□□□□ -0.3
HDDC3-205ENST00000559898 IGKV3-7A0A075B6H7 116 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 IGHV7-4-1A0A0J9YVY3 117 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 K7EMT4 169 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 MFAP4P55083 255 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 APRG1Q8IVJ8 170 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 TERB2Q8NHR7 220 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 ZNF486Q96H40 463 aaPredicted RBP13.14□□□□□ -0.31
HDDC3-205ENST00000559898 SPAG8Q99932 426 aaPredicted RBP13.14□□□□□ -0.31
HDDC3-205ENST00000559898 NXF2Q9GZY0 626 aaKnown RBP13.14□□□□□ -0.31
HDDC3-205ENST00000559898 PRR13Q9NZ81 148 aa13.14□□□□□ -0.31
HDDC3-205ENST00000559898 IGHV3-66A0A0C4DH42 116 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 GABARAPH6UMI1 98 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 YIF1AO95070 293 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 RNASE2P10153 161 aaKnown RBP13.13□□□□□ -0.31
HDDC3-205ENST00000559898 RPL35AP18077 110 aaKnown RBP13.13□□□□□ -0.31
HDDC3-205ENST00000559898 TFPI2P48307 235 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 AKR1C2P52895 323 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 TAS2R19P59542 299 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 TRIM16LQ309B1 348 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 OR4C16Q8NGL9 310 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 DYNC2LI1Q8TCX1 351 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 OR10C1Q96KK4 312 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 RHPN1-AS1Q9BWJ2 59 aa13.13□□□□□ -0.31
HDDC3-205ENST00000559898 FNDC4Q9H6D8 234 aaPredicted RBP13.13□□□□□ -0.31
HDDC3-205ENST00000559898 A0A1B0GU03 582 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 C15orf62A8K5M9 175 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 OR5AC1P0C628 307 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 UCP1P25874 307 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 ANKRD55Q3KP44 614 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 TOMM20LQ6UXN7 152 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 GBGT1Q8N5D6 347 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 TMEM116Q8NCL8 245 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 ATP6V0BQ99437 205 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 ZFAND3Q9H8U3 227 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 COPZ2Q9P299 210 aa13.12□□□□□ -0.31
HDDC3-205ENST00000559898 NUPL2O15504 423 aaKnown RBP13.11□□□□□ -0.31
HDDC3-205ENST00000559898 IFNA17P01571 189 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 TBPP20226 339 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 FCGR2BP31994 310 aaPredicted RBP13.11□□□□□ -0.31
HDDC3-205ENST00000559898 ERHP84090 104 aaKnown RBP13.11□□□□□ -0.31
HDDC3-205ENST00000559898 MEF2DQ14814 521 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 DEFB135Q30KP9 77 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 FAM90A2PQ658T7 463 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 PVRIGQ6DKI7 326 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 SLC35G3Q8N808 338 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 GLYATL2Q8WU03 294 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 SMIM4Q8WVI0 70 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 ST8SIA2Q92186 375 aa13.11□□□□□ -0.31
HDDC3-205ENST00000559898 GNG7O60262 68 aa13.1□□□□□ -0.31
HDDC3-205ENST00000559898 NXPH3O95157 252 aa13.1□□□□□ -0.31
HDDC3-205ENST00000559898 RELQ04864 619 aaPredicted RBP13.1□□□□□ -0.31
HDDC3-205ENST00000559898 SELENOHQ8IZQ5 122 aaKnown RBP13.1□□□□□ -0.31
HDDC3-205ENST00000559898 FAM24BQ8N5W8 94 aa13.1□□□□□ -0.31
HDDC3-205ENST00000559898 ZFAND1Q8TCF1 268 aa13.1□□□□□ -0.31
HDDC3-205ENST00000559898 GPR146Q96CH1 333 aa13.1□□□□□ -0.31
HDDC3-205ENST00000559898 A0A0J9YWU9 116 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 TMEM50AO95807 157 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 HOXA1P49639 335 aaPredicted RBP13.09□□□□□ -0.31
HDDC3-205ENST00000559898 IL18Q14116 193 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 LAMTOR1Q6IAA8 161 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 CCDC71LQ8N9Z2 235 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 TMEM230Q96A57 120 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 DIRAS2Q96HU8 199 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 TXN2Q99757 166 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 TMEM222Q9H0R3 208 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 NAA60Q9H7X0 242 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 GPR132Q9UNW8 380 aa13.09□□□□□ -0.31
HDDC3-205ENST00000559898 PUS1Q9Y606 427 aaKnown RBP eCLIP13.09□□□□□ -0.31
HDDC3-205ENST00000559898 TRAV14DV4A0A0A6YYC5 116 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 TEX13DA0A0J9YY54 714 aaPredicted RBP13.08□□□□□ -0.32
HDDC3-205ENST00000559898 INS-IGF2F8WCM5 200 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 CDS2O95674 445 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 WFDC3Q8IUB2 231 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 OR51S1Q8NGJ8 323 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 TMEM170AQ8WVE7 144 aa13.08□□□□□ -0.32
HDDC3-205ENST00000559898 SLIRPQ9GZT3 109 aaKnown RBP13.08□□□□□ -0.32
HDDC3-205ENST00000559898 CCDC59Q9P031 241 aaKnown RBP13.08□□□□□ -0.32
HDDC3-205ENST00000559898 SNCAP37840 140 aa13.07□□□□□ -0.32
HDDC3-205ENST00000559898 BSXQ3C1V8 233 aa13.07□□□□□ -0.32
HDDC3-205ENST00000559898 TCF24Q7RTU0 167 aa13.07□□□□□ -0.32
HDDC3-205ENST00000559898 IL17DQ8TAD2 202 aa13.07□□□□□ -0.32
HDDC3-205ENST00000559898 C6orf62Q9GZU0 229 aaPredicted RBP13.07□□□□□ -0.32
HDDC3-205ENST00000559898 MAP6D1Q9H9H5 199 aa13.07□□□□□ -0.32
HDDC3-205ENST00000559898 ANKRD20A5PA0PJZ0 165 aa13.06□□□□□ -0.32
HDDC3-205ENST00000559898 OR4C46A6NHA9 309 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms