RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 SLC25A17O43808 307 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 ZFP36P26651 326 aaKnown RBP14.29□□□□□ -0.12
SNX1-208ENST00000559844 RPL29P47914 159 aaKnown RBP14.29□□□□□ -0.12
SNX1-208ENST00000559844 SUB1P53999 127 aaKnown RBP eCLIP14.29□□□□□ -0.12
SNX1-208ENST00000559844 TMEM144Q7Z5S9 345 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 SLC35E3Q7Z769 313 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 PNKDQ8N490 385 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 TVP23CQ96ET8 276 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 ZNF469Q96JG9 3925 aaPredicted RBP14.29□□□□□ -0.12
SNX1-208ENST00000559844 ABCA1O95477 2261 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 YIF1AO95070 293 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 MIC13Q5XKP0 118 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 CACNG8Q8WXS5 425 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 RNF5Q99942 180 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 ZANQ9Y493 2812 aa14.29□□□□□ -0.12
SNX1-208ENST00000559844 LY6LH3BQJ8 138 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 HMGB3O15347 200 aaKnown RBP14.28□□□□□ -0.12
SNX1-208ENST00000559844 FOXH1O75593 365 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 MAS1LP35410 378 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 GPX4P36969 197 aaPredicted RBP14.28□□□□□ -0.12
SNX1-208ENST00000559844 B2MP61769 119 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 MEF2BQ02080 365 aaPredicted RBP14.28□□□□□ -0.12
SNX1-208ENST00000559844 FAM90A2PQ658T7 463 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 MMD2Q8IY49 270 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 OR11H6Q8NGC7 330 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 OR10W1Q8NGF6 305 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 C1orf159Q96HA4 380 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 ACANP16112 2415 aa14.28□□□□□ -0.12
SNX1-208ENST00000559844 IGHV3-72A0A0B4J1Y9 119 aa14.27□□□□□ -0.12
SNX1-208ENST00000559844 CD69Q07108 199 aa14.27□□□□□ -0.12
SNX1-208ENST00000559844 RNASEH2CQ8TDP1 164 aaKnown RBP14.27□□□□□ -0.12
SNX1-208ENST00000559844 EIF3GO75821 320 aaKnown RBP eCLIP14.27□□□□□ -0.13
SNX1-208ENST00000559844 AKR1C3P42330 323 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 DLX1P56177 255 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 ARF6P62330 175 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 PNRC1Q12796 327 aaPredicted RBP14.27□□□□□ -0.13
SNX1-208ENST00000559844 SPNS3Q6ZMD2 512 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 IQCF2Q8IXL9 164 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 KIR3DL3Q8N743 410 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 TMPRSS5Q9H3S3 457 aa14.27□□□□□ -0.13
SNX1-208ENST00000559844 B4DSR2 109 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 CRYGBP07316 175 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 CEACAM3P40198 252 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 GCSAMLQ5JQS6 135 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 TPTE2P1Q5T6R2 138 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 C1orf122Q6ZSJ8 110 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 STPG3Q8N7X2 389 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 SSMEM1Q8WWF3 244 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 RITA1Q96K30 269 aa14.26□□□□□ -0.13
SNX1-208ENST00000559844 A0A087WWC5 75 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 CGB1A6NKQ9 187 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 COLCA2A8K830 154 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 B4DEV8 164 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 TMEM250H0YL14 139 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 MSMBP08118 114 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 IGHV4-31P0DP07 118 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRTN3P24158 256 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 HTR1DP28221 377 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRR20EP86478 221 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRR20CP86479 221 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRR20DP86480 221 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRR20BP86481 221 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRR20AP86496 221 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PSG5Q15238 335 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 PRSS8Q16651 343 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 SLC35E1Q96K37 410 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 ACTL6BO94805 426 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 CD81P60033 236 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 RHOBP62745 196 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 GAMTQ14353 236 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 MRGPRG-AS1Q2M3A8 158 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 SLC16A13Q7RTY0 426 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 LINC01356Q8N9X3 169 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 NANPQ8TBE9 248 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 DPM3Q9P2X0 92 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 CSPG4Q6UVK1 2322 aa14.25□□□□□ -0.13
SNX1-208ENST00000559844 E7EUB6 86 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 CXorf1O96002 111 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 STAG3L2P0CL84 134 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 STAG3L3P0CL85 134 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 PRB3Q04118 309 aaPredicted RBP14.24□□□□□ -0.13
SNX1-208ENST00000559844 WT1-ASQ06250 92 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 C10orf55Q5SWW7 151 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 TPSG1Q9NRR2 321 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 SLC45A2Q9UMX9 530 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 SIGLEC9Q9Y336 463 aa14.24□□□□□ -0.13
SNX1-208ENST00000559844 A0A1W2PPI3 338 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 RPL27AP46776 148 aaKnown RBP14.23□□□□□ -0.13
SNX1-208ENST00000559844 SIRT7Q9NRC8 400 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 METTL1Q9UBP6 276 aaKnown RBP14.23□□□□□ -0.13
SNX1-208ENST00000559844 POLR3KQ9Y2Y1 108 aaPredicted RBP14.23□□□□□ -0.13
SNX1-208ENST00000559844 IGHV2-70DA0A0C4DH43 119 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 PAGE4O60829 102 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 MT-CO2P00403 227 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 TGFAP01135 160 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 DEFA4P12838 97 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 FLI1Q01543 452 aaPredicted RBP14.23□□□□□ -0.13
SNX1-208ENST00000559844 TXNDC17Q9BRA2 123 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 C19orf24Q9BVV8 132 aa14.23□□□□□ -0.13
SNX1-208ENST00000559844 TLN2Q9Y4G6 2542 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms