RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 LHX4Q969G2 390 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 MALSU1Q96EH3 234 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 SEC22AQ96IW7 307 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 CIB3Q96Q77 187 aaPredicted RBP4.1□□□□□ -1.75
LDLR-209ENST00000558528 PRSS22Q9GZN4 317 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 SLC25A31Q9H0C2 315 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 IFI27L2Q9H2X8 130 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 DUX4Q9UBX2 424 aa4.1□□□□□ -1.75
LDLR-209ENST00000558528 TBL2Q9Y4P3 447 aaKnown RBP4.1□□□□□ -1.75
LDLR-209ENST00000558528 BIRC6Q9NR09 4857 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 SAA2-SAA4A0A096LPE2 208 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 KANTRA0A1W2PQU2 76 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 BUB1B-PAK6H3BSN5 160 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 H7C2Y5 167 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 RBMXL2O75526 392 aaKnown RBP4.09□□□□□ -1.75
LDLR-209ENST00000558528 ADAP1O75689 374 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 MPC2O95563 127 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 IGLV1-47P01700 117 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ARG1P05089 322 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 MSMBP08118 114 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 SAA2P0DJI9 122 aaPredicted RBP4.09□□□□□ -1.75
LDLR-209ENST00000558528 CD1BP29016 333 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 BRS3P32247 399 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 P2RY1P47900 373 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 H2BFSP57053 126 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 LCN2P80188 198 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 PAX8Q06710 450 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ZNF345Q14585 488 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 POU2AF1Q16633 256 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 HAGHQ16775 308 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 VMA21Q3ZAQ7 101 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 LINC01620Q4KN68 170 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ZNF585BQ52M93 769 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 EIF5AL1Q6IS14 154 aaKnown RBP4.09□□□□□ -1.75
LDLR-209ENST00000558528 ACOT7LQ6ZUV0 252 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 C5orf24Q7Z6I8 188 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ODF3L1Q8IXM7 274 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 PNKDQ8N490 385 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 C11orf42Q8N5U0 333 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 OR4C5Q8NGB2 326 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 OR52E5Q8NH55 327 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 GPR146Q96CH1 333 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 C17orf77Q96MU5 243 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 TSNAXQ99598 290 aaKnown RBP4.09□□□□□ -1.75
LDLR-209ENST00000558528 ZNF251Q9BRH9 671 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 CHRDL1Q9BU40 450 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 KRTAP3-1Q9BYR8 98 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 MFFQ9GZY8 342 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 MAGT1Q9H0U3 335 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 HIPK2Q9H2X6 1198 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 NARFLQ9H6Q4 476 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ENY2Q9NPA8 101 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ZC4H2Q9NQZ6 224 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 BET1LQ9NYM9 111 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 ZMAT5Q9UDW3 170 aaKnown RBP4.09□□□□□ -1.75
LDLR-209ENST00000558528 PRNDQ9UKY0 176 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 WASHC3Q9Y3C0 194 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 AUP1Q9Y679 476 aa4.09□□□□□ -1.75
LDLR-209ENST00000558528 IGLV5-37A0A075B6J1 123 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 IGHV4-30-2A0A087WSY4 118 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 FXYD6-FXYD2A0A087WZ82 144 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 IGHV4-61A0A0C4DH41 118 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 K7EPK0 472 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 SLC31A2O15432 143 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 PITX3O75364 302 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 DEDDO75618 318 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 MMP23AO75900 390 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CDK2AP2O75956 126 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 SIX6O95475 246 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CRYZL1O95825 349 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 KRASP01116 189 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CT45A6P0DMU7 189 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CT45A5P0DMU8 189 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CT45A7P0DMV0 189 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 COX7A1P24310 79 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 MAS1LP35410 378 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 S100A10P60903 97 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 SPCS3P61009 180 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 RPL30P62888 115 aaKnown RBP4.08□□□□□ -1.76
LDLR-209ENST00000558528 PAX2Q02962 417 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 BAXQ07812 192 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 SRSF9Q13242 221 aaKnown RBP eCLIP4.08□□□□□ -1.76
LDLR-209ENST00000558528 IL15RAQ13261 267 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 RPL39P5Q59GN2 51 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 NMSQ5H8A3 153 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CYB5R2Q6BCY4 276 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 VMO1Q7Z5L0 202 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 HSD17B13Q7Z5P4 300 aaPredicted RBP4.08□□□□□ -1.76
LDLR-209ENST00000558528 MOB3BQ86TA1 216 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 ZNF429Q86V71 674 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 Q8N7P7 452 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 MAPKAPK5-AS1Q8N8E1 139 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 DRAXINQ8NBI3 349 aaPredicted RBP4.08□□□□□ -1.76
LDLR-209ENST00000558528 NEXN-AS1Q8NBZ9 246 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 OR4D5Q8NGN0 318 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 DDB2Q92466 427 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 DCUN1D4Q92564 292 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 CYYR1Q96J86 154 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 OR10C1Q96KK4 312 aa4.08□□□□□ -1.76
LDLR-209ENST00000558528 NABP2Q9BQ15 211 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms