RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 Q8N9W7 124 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 C22orf15Q8WYQ4 148 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 ARPC1AQ92747 370 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 NARS2Q96I59 477 aaKnown RBP9.92□□□□□ -0.82
SHMT2-233ENST00000557529 RASL11BQ9BPW5 248 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 TREM1Q9NP99 234 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 SLC39A9Q9NUM3 307 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 NAV2Q8IVL1 2488 aa9.92□□□□□ -0.82
SHMT2-233ENST00000557529 A0A0U1RQK1 487 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 CTXND1A0A1B0GTU2 59 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 TGFAP01135 160 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 CD5P06127 495 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 FBP1P09467 338 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 CX3CL1P78423 397 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 PEA15Q15121 130 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 GUK1Q16774 197 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 BRD3OSQ6XYD6 125 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 RPP25LQ8N5L8 163 aaKnown RBP9.91□□□□□ -0.82
SHMT2-233ENST00000557529 Q96MF0 132 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 LINC00052Q96N35 136 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 PXMP4Q9Y6I8 212 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 TACC2O95359 2948 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 DOPEY2Q9Y3R5 2298 aa9.91□□□□□ -0.82
SHMT2-233ENST00000557529 A0A1B0GV50 99 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 TMEM218A2RU14 115 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 MAP1LC3B2A6NCE7 125 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 SEC14L6B5MCN3 397 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 CRYGCP07315 174 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 IGHV4-31P0DP07 118 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 CTRB1P17538 263 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 B2MP61769 119 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 ZNF726P1Q15940 193 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 TMEM249Q2WGJ8 235 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 MIC13Q5XKP0 118 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 CTRB2Q6GPI1 263 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 MISP3Q96FF7 219 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 MAP1LC3BQ9GZQ8 125 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 SMDT1Q9H4I9 107 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 FNDC4Q9H6D8 234 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-233ENST00000557529 SLC45A2Q9UMX9 530 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 FBN2P35556 2912 aa9.9□□□□□ -0.82
SHMT2-233ENST00000557529 NPIPB5A8MRT5 1133 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 APELAP0DMC3 54 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 DEFA4P12838 97 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 CDC34P49427 236 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-233ENST00000557529 MFAP2P55001 183 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 SRSF3P84103 164 aaKnown RBP9.89□□□□□ -0.83
SHMT2-233ENST00000557529 PRR20EP86478 221 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 PRR20CP86479 221 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 PRR20DP86480 221 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 PRR20BP86481 221 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 PRR20AP86496 221 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 MLANAQ16655 118 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 KLF17Q5JT82 389 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-233ENST00000557529 HIST2H2BCQ6DN03 193 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 FAM122CQ6P4D5 195 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 LCN15Q6UWW0 184 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 KRTAP1-3Q8IUG1 177 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 STPG3Q8N7X2 389 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 THAP8Q8NA92 274 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 OR2T6Q8NHC8 308 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 ACY3Q96HD9 319 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 RBM14Q96PK6 669 aaKnown RBP9.89□□□□□ -0.83
SHMT2-233ENST00000557529 WNT10AQ9GZT5 417 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 EIF5A2Q9GZV4 153 aaKnown RBP9.89□□□□□ -0.83
SHMT2-233ENST00000557529 MOB4Q9Y3A3 225 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 TENM4Q6N022 2769 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 POLQO75417 2590 aa9.89□□□□□ -0.83
SHMT2-233ENST00000557529 IGHV7-81A0A0B4J1V7 117 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 A0A1W2PPV4 95 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 RBFOX3A6NFN3 312 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 YIF1AO95070 293 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 AVPP01185 164 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 IFNA1P01562 189 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 OR10J1P30954 320 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SELENOTP62341 195 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 CCL20P78556 96 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 PMS2P11Q13670 270 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 TTC9CQ8N5M4 171 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 RAB24Q969Q5 203 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SSX3Q99909 188 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SLC25A33Q9BSK2 321 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SCRT1Q9BWW7 348 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 TMEM231Q9H6L2 316 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SLC25A22Q9H936 323 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 ABCA12Q86UK0 2595 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.88□□□□□ -0.833e-7■■□□□ 14.1
SHMT2-233ENST00000557529 IGKV1OR2-108A0A075B7D4 117 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 MT-CO2P00403 227 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 RND2P52198 227 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 NDPQ00604 133 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 CYB5R2Q6BCY4 276 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 CYP2G1PQ6ZSU1 146 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 SSX7Q7RTT5 188 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 CCDC28AQ8IWP9 274 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 C5orf56Q8N8D9 126 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 TMEM116Q8NCL8 245 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 MAPK1IP1LQ8NDC0 245 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 PIFOQ8TCI5 191 aa9.88□□□□□ -0.83
SHMT2-233ENST00000557529 NPIPB3Q92617 1050 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms