RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	MED13	Q9UHV7	2174 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	HYPM	O75409	117 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGHV3-7	P01780	117 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	GLRX	P35754	106 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	KLF3	P57682	345 aa	Predicted RBP	13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	UBE2L3	P68036	154 aa	Known RBP	13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	BATF	Q16520	125 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	ATP5L2	Q7Z4Y8	100 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	LOXL4	Q96JB6	756 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	RCHY1	Q96PM5	261 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	TXN2	Q99757	166 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	SAP30L	Q9HAJ7	183 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	RNF114	Q9Y508	228 aa		13.27	□□□□□ -0.28
SHMT2-231	ENST00000557433	PSMB11	A5LHX3	300 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	OR2J3	O76001	311 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	CHRNB4	P30926	498 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	ERH	P84090	104 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	KIAA1644	Q3SXP7	199 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	STUM	Q69YW2	141 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	MRPL54	Q6P161	138 aa	Known RBP	13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	FAM167A-AS1	Q96KT0	104 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	RNF7	Q9UBF6	113 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433	LAMTOR2	Q9Y2Q5	125 aa		13.27	□□□□□ -0.29
SHMT2-231	ENST00000557433		A0A1W2PN81	502 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	SPINK4	O60575	86 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	CT45A6	P0DMU7	189 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	CT45A5	P0DMU8	189 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	CT45A7	P0DMV0	189 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	TCL1A	P56279	114 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	BPIFB3	P59826	476 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433		Q6ZN92	141 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	OR4A5	Q8NH83	315 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	C18orf32	Q8TCD1	76 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	ORAOV1	Q8WV07	137 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	LEAP2	Q969E1	77 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	SLC25A2	Q9BXI2	301 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	AHCTF1	Q8WYP5	2266 aa		13.26	□□□□□ -0.29
SHMT2-231	ENST00000557433	IGLV3-9	A0A075B6K5	115 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	TRAV17	A0A0B4J275	112 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	IGFL2	Q6UWQ7	119 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	APOA2	P02652	100 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	HIST1H1E	P10412	219 aa	Known RBP	13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	TBR1	Q16650	682 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	CYB5R2	Q6BCY4	276 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	ITLN1	Q8WWA0	313 aa		13.25	□□□□□ -0.29
SHMT2-231	ENST00000557433	TIMM23B	Q5SRD1	257 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	ATP1A1-AS1	Q5TC04	95 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	HES3	Q5TGS1	186 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	ZNF833P	Q6ZTB9	187 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	C11orf42	Q8N5U0	333 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	STXBP6	Q8NFX7	210 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	OR9G1	Q8NH87	305 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	NDUFA4L2	Q9NRX3	87 aa		13.24	□□□□□ -0.29
SHMT2-231	ENST00000557433	FAM186A	A6NE01	2351 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	hADV38S2	A0JD32	116 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	PEX7	O00628	323 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	COX7A2P2	O60397	106 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	HSBP1	O75506	76 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SAA1	P0DJI8	122 aa	Predicted RBP	13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	MYOD1	P15172	320 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SUB1	P53999	127 aa	Known RBP eCLIP	13.23	□□□□□ -0.29	2e-7	■■■□□ 15.5
SHMT2-231	ENST00000557433	SLC35B1	P78383	322 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	MMD	Q15546	238 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	MSMP	Q1L6U9	139 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SPACA3	Q8IXA5	215 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	VSTM2A	Q8TAG5	236 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	PAXX	Q9BUH6	204 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SOX21	Q9Y651	276 aa	Predicted RBP	13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	TRAV9-2	A0A087WT02	112 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SIAH2	O43255	324 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	SLA	Q13239	276 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	UTF1	Q5T230	341 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	C10orf113	Q5VZT2	155 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	MOB3B	Q86TA1	216 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	ZNF329	Q86UD4	541 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	GAFA1	Q96PS6	74 aa		13.23	□□□□□ -0.29
SHMT2-231	ENST00000557433	CACNA1G	O43497	2377 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	YLPM1	P49750	1951 aa	Known RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	MBD3L4	A6NDZ8	208 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	MBD3L3	A6NE82	208 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	MBD3L5	A6NJ08	208 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	SRRM4	A7MD48	611 aa	Known RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	SPRY3	O43610	288 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	TNFSF4	P23510	183 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	GATA2	P23769	480 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	CA7	P43166	264 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	MFAP2	P55001	183 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	RPL8	P62917	257 aa	Known RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	TMEM177	Q53S58	311 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	PLA2G2C	Q5R387	149 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	FAM71F2	Q6NXP2	309 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	DHRS13	Q6UX07	377 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	ZNF788	Q6ZQV5	615 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	OR8B3	Q8NGG8	313 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	FAM122A	Q96E09	287 aa		13.22	□□□□□ -0.29
SHMT2-231	ENST00000557433	OR8B2	Q96RD0	313 aa		13.22	□□□□□ -0.29

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