RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MISP3Q96FF7 219 aa9.92□□□□□ -0.82
SHMT2-227ENST00000557269 DUX3Q96PT4 197 aa9.92□□□□□ -0.82
SHMT2-227ENST00000557269 OR4C12Q96R67 309 aa9.92□□□□□ -0.82
SHMT2-227ENST00000557269 C11orf1Q9H5F2 150 aa9.92□□□□□ -0.82
SHMT2-227ENST00000557269 LSM5Q9Y4Y9 91 aaKnown RBP9.92□□□□□ -0.82
SHMT2-227ENST00000557269 C15orf62A8K5M9 175 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 H3BP45 60 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 I3L2K1 104 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 I3L521 148 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 TRBV12-3P01733 135 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 IGHV3-48P01763 117 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 HIST1H1BP16401 226 aaKnown RBP9.91□□□□□ -0.82
SHMT2-227ENST00000557269 HTR2BP41595 481 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 RRAS2P62070 204 aaPredicted RBP9.91□□□□□ -0.82
SHMT2-227ENST00000557269 C2orf83Q53S99 150 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 C4orf3Q8WVX3 66 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 USMG5Q96IX5 58 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 CCDC140Q96MF4 163 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 NMES1Q9C002 83 aa9.91□□□□□ -0.82
SHMT2-227ENST00000557269 A0A0G2JLM5 398 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 ANKRD34BA5PLL1 514 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 NUDT19A8MXV4 375 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 H0YIZ8 118 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 TSPAN15O95858 294 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 MT-CO2P00403 227 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 IFNA10P01566 189 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 LGALS1P09382 135 aaKnown RBP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 NPY1RP25929 384 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 SUB1P53999 127 aaKnown RBP eCLIP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 S100A10P60903 97 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 EXOSC2Q13868 293 aaKnown RBP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 LRRC37A5PQ49AS3 106 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 ZNF343Q6P1L6 599 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 ETV3LQ6ZN32 361 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 OR1L6Q8NGR2 347 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 SCARB1Q8WTV0 552 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 CHAC2Q8WUX2 184 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 PINX1Q96BK5 328 aaKnown RBP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 RAX2Q96IS3 184 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 SMIM8Q96KF7 97 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 FNDC4Q9H6D8 234 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 MRPL36Q9P0J6 103 aaKnown RBP9.9□□□□□ -0.82
SHMT2-227ENST00000557269 U3KQ87 197 aa9.9□□□□□ -0.82
SHMT2-227ENST00000557269 F8W735 103 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-227ENST00000557269 CCNKO75909 580 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 RUNX1Q01196 453 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 SPANXN5Q5MJ07 72 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 ZNF502Q8TBZ5 544 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 CIB3Q96Q77 187 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-227ENST00000557269 RAB40CQ96S21 281 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 ZNF436Q9C0F3 470 aaPredicted RBP9.89□□□□□ -0.83
SHMT2-227ENST00000557269 PSENENQ9NZ42 101 aa9.89□□□□□ -0.83
SHMT2-227ENST00000557269 IGHV4OR15-8A0A075B7B6 117 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 A0A087WW49 117 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.88□□□□□ -0.83
SHMT2-227ENST00000557269 A0A1B0GVG6 124 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 CYB5BO43169 146 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 CYCSP99999 105 aaKnown RBP9.88□□□□□ -0.83
SHMT2-227ENST00000557269 Q5BKY6 102 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 CLEC19AQ6UXS0 136 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 VN1R17PQ8TDU5 208 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 PPP1R1CQ8WVI7 109 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 EEF1AKMT3Q96AZ1 226 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 RNF126Q9BV68 326 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 ZC4H2Q9NQZ6 224 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 OR5AC2Q9NZP5 309 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 THYN1Q9P016 225 aa9.88□□□□□ -0.83
SHMT2-227ENST00000557269 PAIP2BQ9ULR5 123 aaKnown RBP9.88□□□□□ -0.83
SHMT2-227ENST00000557269 FAM24AA6NFZ4 105 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 PMS2P5A8MQ11 134 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 PRSS46E5RG02 174 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 PPP5D1E7EU14 171 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 CCL24O00175 119 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 DEDDO75618 318 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 IFNA4P05014 189 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 CLEC3BP05452 202 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 OPRK1P41145 380 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 TAS2R30P59541 319 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 TMEM14EPQ6UXP3 125 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 HAPLN4Q86UW8 402 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 OR11H1Q8NG94 326 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 OR1N2Q8NGR9 330 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 RNASEH2CQ8TDP1 164 aaKnown RBP9.87□□□□□ -0.83
SHMT2-227ENST00000557269 CXorf58Q96LI9 332 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 C21orf62Q9NYP8 219 aa9.87□□□□□ -0.83
SHMT2-227ENST00000557269 PEF1Q9UBV8 284 aaKnown RBP9.87□□□□□ -0.83
SHMT2-227ENST00000557269 STRAPQ9Y3F4 350 aaKnown RBP9.87□□□□□ -0.83
SHMT2-227ENST00000557269 hCG_2014768A0A024R1R8 64 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 TRAV14DV4A0A0A6YYC5 116 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 TRBV7-1A0A0A6YYK4 115 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 L7N2F9 121 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 BMPR1BO00238 502 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 TSC22D2O75157 780 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 MPC2O95563 127 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 HSPB1P04792 205 aaKnown RBP9.86□□□□□ -0.83
SHMT2-227ENST00000557269 OR8U8P0C7N1 319 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 METTL15P1P0C7V9 234 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 GPR183P32249 361 aa9.86□□□□□ -0.83
SHMT2-227ENST00000557269 ATP5IP56385 69 aaPredicted RBP9.86□□□□□ -0.83
SHMT2-227ENST00000557269 VAMP2P63027 116 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms