RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PLET1Q6UQ28 207 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 CLEC19AQ6UXS0 136 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 UXS1Q8NBZ7 420 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 OR1L6Q8NGR2 347 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 PINX1Q96BK5 328 aaKnown RBP13.44□□□□□ -0.26
SHMT2-225ENST00000556798 CXorf58Q96LI9 332 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 ZC4H2Q9NQZ6 224 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 K7EIM0 57 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 CCSO14618 274 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 IFNA21P01568 189 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 SLC25A6P12236 298 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 ZNF502Q8TBZ5 544 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 SCARB1Q8WTV0 552 aa13.43□□□□□ -0.26
SHMT2-225ENST00000556798 RCC1LQ96I51 464 aaKnown RBP13.43□□□□□ -0.26
SHMT2-225ENST00000556798 INMT-MINDY4F8WBC2 141 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 OVOL1O14753 267 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 IGHV3-48P01763 117 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 ZP3P21754 424 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 GPR183P32249 361 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 ARL3P36405 182 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 BSXQ3C1V8 233 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 SAMD5Q5TGI4 173 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 SLC24A4Q8NFF2 622 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 VN1R17PQ8TDU5 208 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 DTD1Q8TEA8 209 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 MAGT1Q9H0U3 335 aa13.42□□□□□ -0.26
SHMT2-225ENST00000556798 TRBV7-1A0A0A6YYK4 115 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 I3L2K1 104 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 MT-CO2P00403 227 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 IL5P05113 134 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 IAPPP10997 89 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 SUB1P53999 127 aaKnown RBP eCLIP13.41□□□□□ -0.269e-7■■■□□ 17.8
SHMT2-225ENST00000556798 RPEL1Q2QD12 228 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 C12orf45Q8N5I9 185 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-225ENST00000556798 UBAC2Q8NBM4 344 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 OR10C1Q96KK4 312 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 HIPK2Q9H2X6 1198 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 C21orf62Q9NYP8 219 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 CACFD1Q9UGQ2 172 aa13.41□□□□□ -0.26
SHMT2-225ENST00000556798 OR2T8A6NH00 312 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 SEC14L6B5MCN3 397 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 CLEC3BP05452 202 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 HTR2BP41595 481 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 SYNJ2BPP57105 145 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 IAH1Q2TAA2 248 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-225ENST00000556798 PVRIGQ6DKI7 326 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 TMEM170AQ8WVE7 144 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 MARVELD1Q9BSK0 173 aa13.4□□□□□ -0.26
SHMT2-225ENST00000556798 FAM25EA8MYX2 175 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 FAM90A26D6RGX4 464 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 F8W735 103 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-225ENST00000556798 GGCTO75223 188 aaKnown RBP13.39□□□□□ -0.27
SHMT2-225ENST00000556798 OR2C1O95371 312 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 NPY1RP25929 384 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 KLF5Q13887 457 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-225ENST00000556798 Q56UQ5 140 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 FAM209BQ5JX69 171 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 OR4D5Q8NGN0 318 aa13.39□□□□□ -0.27
SHMT2-225ENST00000556798 MCRIP2Q9BUT9 160 aaKnown RBP13.39□□□□□ -0.27
SHMT2-225ENST00000556798 GPN1Q9HCN4 374 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-225ENST00000556798 TGOLN2O43493 480 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 SCGB1D2O95969 90 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 PTTG1O95997 202 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 IFNA10P01566 189 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 OPRK1P41145 380 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 C2orf83Q53S99 150 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 ZBTB8BQ8NAP8 495 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-225ENST00000556798 FNDC4Q9H6D8 234 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-225ENST00000556798 PALMDQ9NP74 551 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 GSKIPQ9P0R6 139 aa13.38□□□□□ -0.27
SHMT2-225ENST00000556798 IGHV3-35A0A0C4DH35 117 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 CORTO00230 105 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 WRBO00258 174 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 SYNGR2O43760 224 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 PRAF2O60831 178 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 MED6O75586 246 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 NKX2-1P43699 371 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-225ENST00000556798 POLR2GP62487 172 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHMT2-225ENST00000556798 MLANAQ16655 118 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 BEAN1Q3B7T3 259 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 ACSM6Q6P461 480 aa13.37□□□□□ -0.27
SHMT2-225ENST00000556798 C5orf51A6NDU8 294 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 SAP30O75446 220 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 MFAP4P55083 255 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 ID3Q02535 119 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 C9orf66Q5T8R8 295 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 OR9G4Q8NGQ1 327 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 BSCL2Q96G97 398 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-225ENST00000556798 CHRDL1Q9BU40 450 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 MRPL36Q9P0J6 103 aaKnown RBP13.36□□□□□ -0.27
SHMT2-225ENST00000556798 U3KQ87 197 aa13.36□□□□□ -0.27
SHMT2-225ENST00000556798 SNRPGP15A8MWD9 76 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 H3BP45 60 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 SSSCA1O60232 199 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 ADMP35318 185 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 DCTN2Q13561 401 aaKnown RBP13.35□□□□□ -0.27
SHMT2-225ENST00000556798 HAPLN4Q86UW8 402 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 GPR61Q9BZJ8 451 aa13.35□□□□□ -0.27
SHMT2-225ENST00000556798 PAIP2BQ9ULR5 123 aaKnown RBP13.35□□□□□ -0.27
SHMT2-225ENST00000556798 C15orf62A8K5M9 175 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms